Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG889_RS07730 Genome accession   NZ_CP107882
Coordinates   1815117..1815770 (+) Length   217 a.a.
NCBI ID   WP_326585554.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00481     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810117..1820770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG889_RS07715 (OG889_07735) - 1811842..1812576 (+) 735 WP_326574982.1 Sir2 family NAD-dependent protein deacetylase -
  OG889_RS07720 (OG889_07740) - 1812721..1813527 (-) 807 WP_326574984.1 class I SAM-dependent methyltransferase -
  OG889_RS07725 (OG889_07745) - 1813768..1815033 (+) 1266 WP_326585553.1 sensor histidine kinase -
  OG889_RS07730 (OG889_07750) vraR 1815117..1815770 (+) 654 WP_326585554.1 response regulator transcription factor Regulator
  OG889_RS07735 (OG889_07755) - 1815823..1816314 (-) 492 WP_326574985.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG889_RS07740 (OG889_07760) - 1816399..1817883 (-) 1485 WP_326585555.1 AlkA N-terminal domain-containing protein -
  OG889_RS07745 (OG889_07765) - 1818064..1820028 (-) 1965 WP_326585556.1 heavy metal translocating P-type ATPase -
  OG889_RS07750 (OG889_07770) - 1820086..1820454 (+) 369 WP_326574986.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 22972.41 Da        Isoelectric Point: 8.0889

>NTDB_id=647984 OG889_RS07730 WP_326585554.1 1815117..1815770(+) (vraR) [Streptomyces sp. NBC_00481]
MRLLLCDDHAVVRAGLRALLSSADGIEVVGEAGTGEEALALAARLRPDVVLMDLQLGDGVDGVTATRRLTSRPADARHSP
TAPPAPAPRVLVLTMFDTDADISRAIEAGATGYLLKAERPDELFAAIRDAAAGRTALSAPVADRLLAQLRSPRPALSERE
HEILGQLARGLGNREIARALFISEATVKTHLGRIYGKLGVETRSGAVAVAKERRLLP

Nucleotide


Download         Length: 654 bp        

>NTDB_id=647984 OG889_RS07730 WP_326585554.1 1815117..1815770(+) (vraR) [Streptomyces sp. NBC_00481]
GTGCGGCTCCTGCTGTGCGACGACCACGCCGTCGTACGCGCCGGGCTGCGCGCGCTGCTGTCCAGTGCCGACGGCATCGA
GGTGGTCGGTGAGGCGGGCACCGGTGAGGAGGCGCTCGCCCTGGCCGCCCGCCTGCGCCCCGACGTCGTACTGATGGACC
TGCAACTCGGCGACGGCGTGGACGGCGTGACGGCCACCCGTCGGCTGACCTCACGGCCGGCCGACGCCCGGCACTCCCCC
ACCGCCCCGCCCGCTCCGGCCCCCCGCGTCCTCGTGCTCACCATGTTCGACACCGACGCCGACATCAGCCGTGCCATCGA
AGCGGGGGCCACCGGCTATCTCCTCAAGGCCGAGCGGCCCGACGAACTGTTCGCGGCGATCCGCGACGCCGCGGCCGGCC
GTACCGCGCTGTCGGCGCCGGTGGCCGACCGGCTGCTGGCCCAACTGCGCAGCCCACGGCCCGCGTTGTCCGAGCGCGAG
CACGAGATCCTCGGTCAGCTGGCCCGTGGCCTGGGCAACCGGGAGATAGCGCGAGCCCTCTTCATCAGCGAGGCGACCGT
CAAGACCCACCTCGGCCGCATCTACGGCAAGCTGGGCGTGGAGACCCGGTCGGGCGCGGTGGCCGTGGCGAAGGAGCGCC
GCCTGCTGCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-128)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.364

100

0.369