Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OIO39_RS20160 Genome accession   NZ_CP107587
Coordinates   956272..956457 (+) Length   61 a.a.
NCBI ID   WP_002014174.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326527-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 951272..961457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO39_RS04580 (OIO39_04580) - 951405..951620 (+) 216 WP_000153154.1 hypothetical protein -
  OIO39_RS04585 (OIO39_04585) - 951623..951832 (+) 210 WP_001016479.1 helix-turn-helix domain-containing protein -
  OIO39_RS04590 (OIO39_04590) - 951829..952383 (+) 555 WP_001988245.1 BRO family protein -
  OIO39_RS04595 (OIO39_04595) - 952376..952744 (+) 369 WP_001046481.1 hypothetical protein -
  OIO39_RS04600 (OIO39_04600) - 952754..953068 (+) 315 WP_000787150.1 hypothetical protein -
  OIO39_RS04605 (OIO39_04605) - 953183..953461 (+) 279 WP_001064707.1 hypothetical protein -
  OIO39_RS04610 (OIO39_04610) - 953474..955939 (+) 2466 WP_001022394.1 DUF927 domain-containing protein -
  OIO39_RS20160 (OIO39_04615) ssb 956272..956457 (+) 186 WP_002014174.1 single-stranded DNA-binding protein Machinery gene
  OIO39_RS04620 (OIO39_04620) - 956695..957480 (+) 786 WP_227504056.1 TIGR04255 family protein -
  OIO39_RS04625 (OIO39_04625) - 957471..958040 (+) 570 WP_000425724.1 helix-turn-helix domain-containing protein -
  OIO39_RS04630 (OIO39_04630) - 958050..958871 (+) 822 WP_001258235.1 hypothetical protein -

Sequence

Protein


Download         Length: 61 a.a.        Molecular weight: 6605.37 Da        Isoelectric Point: 7.0070

>NTDB_id=643999 OIO39_RS20160 WP_002014174.1 956272..956457(+) (ssb) [Acinetobacter baumannii strain 1326527-2]
MPNVNKVTVMGVLGRDPETKNFPYGGSITTFSVVTSEFWKDKTTGEHKNKLNGAESATATD

Nucleotide


Download         Length: 186 bp        

>NTDB_id=643999 OIO39_RS20160 WP_002014174.1 956272..956457(+) (ssb) [Acinetobacter baumannii strain 1326527-2]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTATTAGGCCGTGACCCTGAAACTAAGAATTTTCCCTATGGTGGCAG
TATTACGACATTCAGCGTGGTTACATCAGAGTTTTGGAAGGACAAGACCACTGGAGAACATAAGAACAAACTGAATGGCG
CAGAATCAGCAACAGCAACCGACTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.064

77.049

0.393
  ssb Glaesserella parasuis strain SC1401

50

78.689

0.393