Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA22_RS07790 Genome accession   NZ_CP107275
Coordinates   1688985..1689410 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PALA22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683985..1694410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA22_RS07770 (PALA22_01544) ileS 1684142..1686973 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  PALA22_RS07775 (PALA22_01545) lspA 1686966..1687475 (+) 510 WP_003102615.1 signal peptidase II -
  PALA22_RS07780 (PALA22_01546) fkpB 1687468..1687908 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PALA22_RS07785 (PALA22_01547) ispH 1687994..1688938 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PALA22_RS07790 (PALA22_01548) comF 1688985..1689410 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PALA22_RS07795 (PALA22_01549) pilY2 1689407..1689754 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PALA22_RS07800 (PALA22_01550) pilY1 1689756..1693247 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  PALA22_RS07805 (PALA22_01551) pilX 1693259..1693846 (-) 588 WP_003102605.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=643242 PALA22_RS07790 WP_003094721.1 1688985..1689410(-) (comF) [Pseudomonas aeruginosa strain PALA22]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=643242 PALA22_RS07790 WP_003094721.1 1688985..1689410(-) (comF) [Pseudomonas aeruginosa strain PALA22]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383