Detailed information NTG0643241

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LZQ98_RS24620
• Genome accession: NZ_CP090527
• Coordinates: 2861439..2862578 (-)
• Length: 379 a.a.
• NCBI ID: WP_224446158.1
• Uniprot ID: -
• Organism: Cupriavidus metallidurans strain ZM16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2856439..2867578

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZQ98_RS24590	glcF	2857168..2858439 (+)	1272	WP_011517474.1	glycolate oxidase subunit GlcF	-
LZQ98_RS24595	-	2858576..2858962 (+)	387	WP_008641946.1	CidA/LrgA family protein	-
LZQ98_RS24600	-	2858959..2859684 (+)	726	WP_008641945.1	LrgB family protein	-
LZQ98_RS24605	-	2859770..2860150 (+)	381	WP_017514351.1	VOC family protein	-
LZQ98_RS24610	-	2860170..2860862 (+)	693	WP_008641943.1	helix-turn-helix transcriptional regulator	-
LZQ98_RS24615	-	2860889..2861383 (-)	495	WP_008641942.1	glutathione peroxidase	-
LZQ98_RS24620	pilU	2861439..2862578 (-)	1140	WP_224446158.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LZQ98_RS24625	pilT	2862596..2863639 (-)	1044	WP_224445302.1	type IV pilus twitching motility protein PilT	Machinery gene
LZQ98_RS24630	-	2863703..2864392 (+)	690	WP_224445303.1	YggS family pyridoxal phosphate-dependent enzyme	-
LZQ98_RS24635	proC	2864474..2865295 (+)	822	WP_224446159.1	pyrroline-5-carboxylate reductase	-
LZQ98_RS24640	ubiA	2865347..2866231 (-)	885	WP_008641934.1	4-hydroxybenzoate octaprenyltransferase	-
LZQ98_RS24645	-	2866346..2866831 (-)	486	WP_008641932.1	Dps family protein	-
LZQ98_RS24650	-	2866917..2867108 (-)	192	WP_029307173.1	hypothetical protein	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 42545.95 Da
• Isoelectric Point: 6.6193

>NTDB_id=643241 LZQ98_RS24620 WP_224446158.1 2861439..2862578(-) (pilU) [Cupriavidus metallidurans strain ZM16]
MLDRESAAKYINEMLGLMVKNRGSDLFITAEFPPAVKVDGKITPVSQQPLNPTHALTLVCSIMNERQTKEFEDTRECNFA
IAVPDVGRFRVSAFIQQGRAGMVLRTINTRIPSVEDLDLPPTLHEIVMSKRGLVIVTGATGSGKSTSLAAMLDHRNAHSY
GHIITIEDPIEYVHAHQNCIVTQREVGIDTESWHVALKNTLRQAPDVILIGEIRDRDTMEYAMQYAETGHLCLATLHANN
ANQAIDRIVNFFPEEKRQQLLIDLSLNLKAMISQRLLPRAGRKGRVPAVEIMIGTPLVADLIFKGEIHELKEVIKKSREQ
GMVSFDQALFELYETEKITYEDALKNADSLNDLRLMIKLHSKRHRDNDLGAGTEHLNVI

Nucleotide

• Length: 1140 bp

>NTDB_id=643241 LZQ98_RS24620 WP_224446158.1 2861439..2862578(-) (pilU) [Cupriavidus metallidurans strain ZM16]
ATGCTCGACCGCGAATCCGCTGCAAAGTACATCAACGAAATGCTGGGGCTGATGGTCAAGAACCGTGGCTCCGATCTGTT
CATCACCGCGGAATTTCCTCCGGCCGTCAAGGTCGACGGGAAGATCACGCCGGTTTCCCAGCAGCCGTTGAATCCGACTC
ACGCGCTGACCCTGGTGTGTTCGATCATGAACGAACGCCAGACCAAGGAGTTCGAGGACACCCGCGAATGCAATTTCGCG
ATCGCCGTGCCGGACGTCGGACGATTCCGTGTCTCGGCCTTCATCCAGCAAGGCCGCGCGGGCATGGTGCTGCGGACCAT
CAACACGCGCATTCCATCGGTCGAAGACCTGGACCTGCCGCCGACGCTGCATGAGATCGTGATGTCCAAGCGCGGTCTGG
TGATCGTCACCGGCGCCACAGGCTCGGGCAAGTCGACCTCGCTGGCGGCCATGCTCGACCACCGCAACGCGCATTCGTAC
GGCCACATCATCACGATCGAGGACCCGATCGAATACGTCCACGCGCATCAGAACTGCATCGTCACGCAGCGCGAGGTGGG
GATCGACACCGAGTCGTGGCACGTCGCGCTCAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAAATCC
GCGATCGCGACACGATGGAATACGCGATGCAGTACGCGGAAACGGGCCACCTTTGCCTGGCCACGCTGCACGCGAACAAC
GCCAACCAGGCGATCGACCGTATCGTCAACTTCTTCCCAGAGGAAAAGCGCCAGCAGCTTCTGATCGACCTGTCGCTGAA
CCTGAAGGCGATGATCTCGCAGCGCCTGCTGCCACGTGCCGGCCGCAAGGGCCGCGTGCCGGCGGTGGAGATCATGATCG
GCACGCCGCTAGTGGCCGACCTGATCTTCAAGGGCGAGATTCACGAGCTCAAGGAAGTCATCAAGAAGTCGCGCGAGCAG
GGCATGGTCTCGTTCGACCAGGCGCTGTTCGAACTCTACGAGACGGAGAAGATCACGTACGAAGACGCGCTCAAGAACGC
TGACTCGCTCAACGACCTGCGCCTGATGATCAAACTCCACAGCAAACGCCATCGCGACAACGATCTCGGCGCCGGCACCG
AACACCTGAACGTGATCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-278)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	62.857	92.348	0.58
pilU	Acinetobacter baylyi ADP1	59.143	92.348	0.546
pilU	Vibrio cholerae strain A1552	54.545	95.778	0.522
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	45.401	88.918	0.404
pilT	Legionella pneumophila strain Lp02	44.444	87.863	0.39
pilT	Legionella pneumophila strain ERS1305867	44.444	87.863	0.39
pilT	Pseudomonas stutzeri DSM 10701	43.323	88.918	0.385
pilT	Pseudomonas aeruginosa PAK	43.323	88.918	0.385
pilT	Acinetobacter nosocomialis M2	44.514	84.169	0.375
pilT	Acinetobacter baumannii D1279779	44.514	84.169	0.375
pilT	Acinetobacter baumannii strain A118	44.514	84.169	0.375
pilT	Acinetobacter baylyi ADP1	44.099	84.96	0.375
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	43.849	83.641	0.367
pilT	Vibrio cholerae strain A1552	43.849	83.641	0.367