Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | LVE68_RS11850 | Genome accession | NZ_CP089928 |
| Coordinates | 2749628..2750662 (-) | Length | 344 a.a. |
| NCBI ID | WP_232940613.1 | Uniprot ID | - |
| Organism | Microbulbifer sp. YPW16 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2744628..2755662
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVE68_RS11840 (LVE68_11840) | - | 2745464..2748154 (-) | 2691 | WP_232940611.1 | kelch repeat-containing protein | - |
| LVE68_RS11845 (LVE68_11845) | pilU | 2748387..2749535 (-) | 1149 | WP_232940612.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LVE68_RS11850 (LVE68_11850) | pilT | 2749628..2750662 (-) | 1035 | WP_232940613.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LVE68_RS11855 (LVE68_11855) | - | 2750788..2751486 (+) | 699 | WP_232940614.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| LVE68_RS11860 (LVE68_11860) | proC | 2751590..2752417 (+) | 828 | WP_334078283.1 | pyrroline-5-carboxylate reductase | - |
| LVE68_RS11865 (LVE68_11865) | - | 2752469..2753074 (+) | 606 | WP_232940615.1 | YggT family protein | - |
| LVE68_RS11870 (LVE68_11870) | - | 2753305..2755272 (+) | 1968 | WP_232940616.1 | dynamin family protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38372.11 Da Isoelectric Point: 6.4349
>NTDB_id=639182 LVE68_RS11850 WP_232940613.1 2749628..2750662(-) (pilT) [Microbulbifer sp. YPW16]
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDVRRINLPPMEHKEVHALIYEIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNHNRGAGAVFRTIPSKVLTMEDLGMGQVFKQISDMPRGLVLVTGPTGSGKSTSLAAMVDYINDNKYEHILTVED
PIEFVHESKKCLVNQREVHRDTHGFAEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAAEKAMVRSMLSESLQAVISQTLMKRVGGGRVAAHEIMRGTPAIRNLIREDKIAQMYSAIQTGANVGMQTMDQCL
QDLVEKRIISRETAREKAKMPENF
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDVRRINLPPMEHKEVHALIYEIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNHNRGAGAVFRTIPSKVLTMEDLGMGQVFKQISDMPRGLVLVTGPTGSGKSTSLAAMVDYINDNKYEHILTVED
PIEFVHESKKCLVNQREVHRDTHGFAEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAAEKAMVRSMLSESLQAVISQTLMKRVGGGRVAAHEIMRGTPAIRNLIREDKIAQMYSAIQTGANVGMQTMDQCL
QDLVEKRIISRETAREKAKMPENF
Nucleotide
Download Length: 1035 bp
>NTDB_id=639182 LVE68_RS11850 WP_232940613.1 2749628..2750662(-) (pilT) [Microbulbifer sp. YPW16]
ATGGACATCACAGAACTCCTCGCCTTCAGCGCCAAGCAGAACGCTTCCGACTTGCACCTCTCCGCCGGGCTGCCGCCGAT
GATCCGGGTGGATGGCGATGTGCGCCGCATCAACCTGCCCCCGATGGAGCACAAGGAGGTCCACGCGCTGATCTATGAGA
TCATGAACGACAAGCAGCGCAAGGATTTCGAGGAGTTCCTGGAAACGGACTTCTCCTTCGAAGTCCCGGGCGTCGCCCGC
TTCCGGGTCAACGCCTTCAACCACAACCGCGGTGCCGGCGCCGTGTTCCGGACCATTCCCTCCAAGGTACTGACCATGGA
GGACCTGGGCATGGGCCAGGTGTTCAAGCAGATCTCCGACATGCCGCGCGGCCTGGTGCTGGTCACCGGCCCCACCGGTT
CCGGTAAGTCCACCAGCCTGGCGGCCATGGTGGACTACATCAATGACAACAAGTACGAGCACATCCTCACCGTCGAGGAC
CCGATCGAATTCGTGCACGAATCCAAGAAGTGCCTGGTGAACCAGCGCGAGGTGCACCGCGACACCCACGGCTTCGCCGA
GGCACTGCGCTCCGCCCTGCGGGAAGACCCGGACATCATCCTCGTGGGCGAGATGCGTGACCTGGAGACCATTCGTCTGG
CGCTCACCGCCGCGGAGACTGGCCACCTGGTATTCGGCACCCTGCACACCACCTCCGCCGCCAAGACCATCGACCGGGTG
GTTGACGTGTTCCCGGCCGCGGAAAAGGCCATGGTGCGCTCAATGCTGTCGGAATCCCTGCAGGCGGTGATCTCCCAGAC
GCTGATGAAGCGCGTCGGTGGCGGCCGCGTGGCGGCACATGAAATCATGCGCGGCACCCCGGCGATCCGTAACCTGATCC
GTGAGGACAAGATCGCGCAGATGTACTCCGCCATCCAGACCGGCGCCAATGTGGGCATGCAGACCATGGACCAGTGCCTC
CAGGACCTGGTCGAGAAGCGCATCATCAGCCGCGAGACGGCGCGCGAAAAAGCCAAGATGCCGGAAAATTTCTAA
ATGGACATCACAGAACTCCTCGCCTTCAGCGCCAAGCAGAACGCTTCCGACTTGCACCTCTCCGCCGGGCTGCCGCCGAT
GATCCGGGTGGATGGCGATGTGCGCCGCATCAACCTGCCCCCGATGGAGCACAAGGAGGTCCACGCGCTGATCTATGAGA
TCATGAACGACAAGCAGCGCAAGGATTTCGAGGAGTTCCTGGAAACGGACTTCTCCTTCGAAGTCCCGGGCGTCGCCCGC
TTCCGGGTCAACGCCTTCAACCACAACCGCGGTGCCGGCGCCGTGTTCCGGACCATTCCCTCCAAGGTACTGACCATGGA
GGACCTGGGCATGGGCCAGGTGTTCAAGCAGATCTCCGACATGCCGCGCGGCCTGGTGCTGGTCACCGGCCCCACCGGTT
CCGGTAAGTCCACCAGCCTGGCGGCCATGGTGGACTACATCAATGACAACAAGTACGAGCACATCCTCACCGTCGAGGAC
CCGATCGAATTCGTGCACGAATCCAAGAAGTGCCTGGTGAACCAGCGCGAGGTGCACCGCGACACCCACGGCTTCGCCGA
GGCACTGCGCTCCGCCCTGCGGGAAGACCCGGACATCATCCTCGTGGGCGAGATGCGTGACCTGGAGACCATTCGTCTGG
CGCTCACCGCCGCGGAGACTGGCCACCTGGTATTCGGCACCCTGCACACCACCTCCGCCGCCAAGACCATCGACCGGGTG
GTTGACGTGTTCCCGGCCGCGGAAAAGGCCATGGTGCGCTCAATGCTGTCGGAATCCCTGCAGGCGGTGATCTCCCAGAC
GCTGATGAAGCGCGTCGGTGGCGGCCGCGTGGCGGCACATGAAATCATGCGCGGCACCCCGGCGATCCGTAACCTGATCC
GTGAGGACAAGATCGCGCAGATGTACTCCGCCATCCAGACCGGCGCCAATGTGGGCATGCAGACCATGGACCAGTGCCTC
CAGGACCTGGTCGAGAAGCGCATCATCAGCCGCGAGACGGCGCGCGAAAAAGCCAAGATGCCGGAAAATTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
88.953 |
100 |
0.89 |
| pilT | Pseudomonas stutzeri DSM 10701 |
87.5 |
100 |
0.875 |
| pilT | Acinetobacter nosocomialis M2 |
83.43 |
100 |
0.834 |
| pilT | Acinetobacter baumannii D1279779 |
83.43 |
100 |
0.834 |
| pilT | Acinetobacter baumannii strain A118 |
83.43 |
100 |
0.834 |
| pilT | Acinetobacter baylyi ADP1 |
80.233 |
100 |
0.802 |
| pilT | Legionella pneumophila strain Lp02 |
74.852 |
98.256 |
0.735 |
| pilT | Legionella pneumophila strain ERS1305867 |
74.852 |
98.256 |
0.735 |
| pilT | Neisseria meningitidis 8013 |
67.246 |
100 |
0.674 |
| pilT | Neisseria gonorrhoeae MS11 |
66.957 |
100 |
0.672 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.647 |
98.837 |
0.669 |
| pilT | Vibrio cholerae strain A1552 |
67.647 |
98.837 |
0.669 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.304 |
100 |
0.515 |
| pilU | Vibrio cholerae strain A1552 |
40.118 |
98.547 |
0.395 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.597 |
97.384 |
0.395 |
| pilU | Acinetobacter baylyi ADP1 |
39.017 |
100 |
0.392 |