Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | LRR79_RS02360 | Genome accession | NZ_CP088953 |
| Coordinates | 583730..584764 (+) | Length | 344 a.a. |
| NCBI ID | WP_010133748.1 | Uniprot ID | - |
| Organism | Microbulbifer elongatus strain DSM 6810 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 578730..589764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRR79_RS02340 | - | 579140..581107 (-) | 1968 | WP_231758815.1 | dynamin family protein | - |
| LRR79_RS02345 | - | 581439..582044 (-) | 606 | WP_231758816.1 | YggT family protein | - |
| LRR79_RS02350 | proC | 582069..582896 (-) | 828 | WP_231758817.1 | pyrroline-5-carboxylate reductase | - |
| LRR79_RS02355 | - | 582920..583618 (-) | 699 | WP_231758818.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| LRR79_RS02360 | pilT | 583730..584764 (+) | 1035 | WP_010133748.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LRR79_RS02365 | pilU | 584900..586048 (+) | 1149 | WP_231758819.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LRR79_RS02370 | - | 586073..586690 (+) | 618 | WP_231758820.1 | LysE family translocator | - |
| LRR79_RS02375 | - | 586717..587475 (-) | 759 | WP_231758821.1 | LytTR family DNA-binding domain-containing protein | - |
| LRR79_RS02380 | - | 587472..588758 (-) | 1287 | WP_231758822.1 | sensor histidine kinase | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38410.04 Da Isoelectric Point: 6.4349
>NTDB_id=634122 LRR79_RS02360 WP_010133748.1 583730..584764(+) (pilT) [Microbulbifer elongatus strain DSM 6810]
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDVRRINLPPMEHKQVHGLIYEIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNHNRGAGAVFRTIPSKVLTMEDLGMGQVFKQISDTPRGLVLVTGPTGSGKSTSLAAMIDYINDNKYEHILTVED
PIEFVHESKKCLVNQREVHRDTHGFAEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKAMVRSMLSESLQAVISQTLLKRNGGGRVAAHEIMRGTPAIRNLIREDKIAQMYSAIQTGANVGMQTMDQCL
QDLVEKRIISREVAREKAKMPENF
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDVRRINLPPMEHKQVHGLIYEIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNHNRGAGAVFRTIPSKVLTMEDLGMGQVFKQISDTPRGLVLVTGPTGSGKSTSLAAMIDYINDNKYEHILTVED
PIEFVHESKKCLVNQREVHRDTHGFAEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKAMVRSMLSESLQAVISQTLLKRNGGGRVAAHEIMRGTPAIRNLIREDKIAQMYSAIQTGANVGMQTMDQCL
QDLVEKRIISREVAREKAKMPENF
Nucleotide
Download Length: 1035 bp
>NTDB_id=634122 LRR79_RS02360 WP_010133748.1 583730..584764(+) (pilT) [Microbulbifer elongatus strain DSM 6810]
ATGGACATTACAGAACTCCTCGCCTTCAGCGCCAAACAGAACGCCTCCGACTTGCACCTCTCTGCGGGCCTGCCGCCGAT
GATCCGGGTCGACGGCGACGTGCGCCGTATCAACCTGCCGCCCATGGAGCACAAGCAGGTGCACGGCCTGATCTACGAGA
TCATGAACGACAAGCAGCGCAAGGACTACGAAGAGTTCCTGGAGACCGACTTCTCTTTCGAAGTCCCCGGTGTGGCCCGC
TTCCGTGTGAACGCGTTCAACCACAACCGCGGTGCCGGCGCCGTATTCCGGACCATTCCCTCCAAGGTACTCACCATGGA
AGATCTGGGCATGGGACAGGTGTTCAAGCAGATCTCCGACACCCCCAGAGGCCTGGTGCTGGTGACCGGCCCCACCGGCT
CCGGTAAGTCCACCTCGCTCGCGGCCATGATCGACTACATCAACGACAACAAGTACGAGCACATCCTCACCGTCGAGGAC
CCGATCGAATTCGTGCACGAATCCAAGAAGTGCCTGGTCAACCAGCGGGAAGTCCACCGCGACACCCACGGCTTCGCCGA
AGCCCTGCGCTCGGCGCTGCGGGAAGACCCGGACATCATCCTCGTGGGTGAGATGCGGGACCTCGAGACCATCCGCCTGG
CACTGACCGCCGCGGAAACCGGCCACCTGGTATTCGGCACACTGCACACCACCTCCGCCGCCAAGACCATCGACCGTGTT
GTCGACGTGTTCCCCGCGGAAGAAAAAGCCATGGTGCGCTCCATGCTGTCGGAATCCCTGCAGGCGGTCATCTCCCAGAC
CCTGCTCAAGCGCAACGGCGGCGGCCGTGTCGCCGCCCACGAAATCATGCGCGGCACCCCGGCGATCCGGAACCTGATCC
GTGAGGACAAGATCGCGCAGATGTACTCCGCCATCCAGACCGGCGCCAACGTGGGCATGCAGACCATGGACCAGTGCCTG
CAGGACCTGGTCGAGAAGCGCATCATCAGCCGCGAAGTGGCGCGTGAGAAAGCAAAAATGCCGGAGAATTTCTAA
ATGGACATTACAGAACTCCTCGCCTTCAGCGCCAAACAGAACGCCTCCGACTTGCACCTCTCTGCGGGCCTGCCGCCGAT
GATCCGGGTCGACGGCGACGTGCGCCGTATCAACCTGCCGCCCATGGAGCACAAGCAGGTGCACGGCCTGATCTACGAGA
TCATGAACGACAAGCAGCGCAAGGACTACGAAGAGTTCCTGGAGACCGACTTCTCTTTCGAAGTCCCCGGTGTGGCCCGC
TTCCGTGTGAACGCGTTCAACCACAACCGCGGTGCCGGCGCCGTATTCCGGACCATTCCCTCCAAGGTACTCACCATGGA
AGATCTGGGCATGGGACAGGTGTTCAAGCAGATCTCCGACACCCCCAGAGGCCTGGTGCTGGTGACCGGCCCCACCGGCT
CCGGTAAGTCCACCTCGCTCGCGGCCATGATCGACTACATCAACGACAACAAGTACGAGCACATCCTCACCGTCGAGGAC
CCGATCGAATTCGTGCACGAATCCAAGAAGTGCCTGGTCAACCAGCGGGAAGTCCACCGCGACACCCACGGCTTCGCCGA
AGCCCTGCGCTCGGCGCTGCGGGAAGACCCGGACATCATCCTCGTGGGTGAGATGCGGGACCTCGAGACCATCCGCCTGG
CACTGACCGCCGCGGAAACCGGCCACCTGGTATTCGGCACACTGCACACCACCTCCGCCGCCAAGACCATCGACCGTGTT
GTCGACGTGTTCCCCGCGGAAGAAAAAGCCATGGTGCGCTCCATGCTGTCGGAATCCCTGCAGGCGGTCATCTCCCAGAC
CCTGCTCAAGCGCAACGGCGGCGGCCGTGTCGCCGCCCACGAAATCATGCGCGGCACCCCGGCGATCCGGAACCTGATCC
GTGAGGACAAGATCGCGCAGATGTACTCCGCCATCCAGACCGGCGCCAACGTGGGCATGCAGACCATGGACCAGTGCCTG
CAGGACCTGGTCGAGAAGCGCATCATCAGCCGCGAAGTGGCGCGTGAGAAAGCAAAAATGCCGGAGAATTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
88.953 |
100 |
0.89 |
| pilT | Pseudomonas stutzeri DSM 10701 |
87.5 |
100 |
0.875 |
| pilT | Acinetobacter nosocomialis M2 |
84.302 |
100 |
0.843 |
| pilT | Acinetobacter baumannii D1279779 |
84.302 |
100 |
0.843 |
| pilT | Acinetobacter baumannii strain A118 |
84.302 |
100 |
0.843 |
| pilT | Acinetobacter baylyi ADP1 |
80.523 |
100 |
0.805 |
| pilT | Legionella pneumophila strain Lp02 |
76.036 |
98.256 |
0.747 |
| pilT | Legionella pneumophila strain ERS1305867 |
76.036 |
98.256 |
0.747 |
| pilT | Neisseria meningitidis 8013 |
68.116 |
100 |
0.683 |
| pilT | Neisseria gonorrhoeae MS11 |
67.536 |
100 |
0.677 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.647 |
98.837 |
0.669 |
| pilT | Vibrio cholerae strain A1552 |
67.647 |
98.837 |
0.669 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.884 |
100 |
0.52 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.896 |
97.384 |
0.398 |
| pilU | Vibrio cholerae strain A1552 |
40.413 |
98.547 |
0.398 |
| pilU | Acinetobacter baylyi ADP1 |
39.017 |
100 |
0.392 |