Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LQZ07_RS20165 Genome accession   NZ_CP088080
Coordinates   4366457..4367491 (-) Length   344 a.a.
NCBI ID   WP_016401371.1    Uniprot ID   R9PK19
Organism   Agarivorans sp. B2Z047     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4361457..4372491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQZ07_RS20140 (LQZ07_20140) srmB 4361635..4362891 (+) 1257 WP_016401366.1 ATP-dependent RNA helicase SrmB -
  LQZ07_RS20145 (LQZ07_20145) - 4362954..4363700 (-) 747 WP_194164186.1 OmpA family protein -
  LQZ07_RS20150 (LQZ07_20150) - 4363909..4364376 (-) 468 WP_152784433.1 hypothetical protein -
  LQZ07_RS20155 (LQZ07_20155) yaaA 4364539..4365312 (-) 774 WP_152784431.1 peroxide stress protein YaaA -
  LQZ07_RS20160 (LQZ07_20160) pilU 4365330..4366448 (-) 1119 WP_016401370.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LQZ07_RS20165 (LQZ07_20165) pilT 4366457..4367491 (-) 1035 WP_016401371.1 type IV pilus twitching motility protein PilT Machinery gene
  LQZ07_RS20170 (LQZ07_20170) - 4367517..4368215 (+) 699 WP_152784429.1 YggS family pyridoxal phosphate-dependent enzyme -
  LQZ07_RS20175 (LQZ07_20175) proC 4368403..4369224 (+) 822 WP_152784428.1 pyrroline-5-carboxylate reductase -
  LQZ07_RS20180 (LQZ07_20180) - 4369242..4369787 (+) 546 WP_016401374.1 YggT family protein -
  LQZ07_RS20185 (LQZ07_20185) yggU 4369788..4370078 (+) 291 WP_016401375.1 DUF167 family protein YggU -
  LQZ07_RS20190 (LQZ07_20190) - 4370137..4370571 (+) 435 WP_152784426.1 DUF4426 domain-containing protein -
  LQZ07_RS20195 (LQZ07_20195) rdgB 4370917..4371516 (+) 600 WP_152784423.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38335.92 Da        Isoelectric Point: 6.3901

>NTDB_id=632586 LQZ07_RS20165 WP_016401371.1 4366457..4367491(-) (pilT) [Agarivorans sp. B2Z047]
MDVTELLAFSVKHNASDLHLSAELPPMIRVDGEVRKINVPALEHKQVHSLIYDIMNDKQRKEYEENLEIDFSFEVPGVAR
FRVNAFQQSRGAAAVFRTIPSEVLSLEQLGAPAIFRQIAEHPRGLVLVTGPTGSGKSTTLAAMIDYINEQRHEHILTIED
PIEFVHKNKNCLINQREVHRDTHSFNNALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAAEKDMVRSMLSESLRAVIAQTLLKKLGGGRVAAHEIMTGIPAIRNLIREDKVAQMYSVIQTGMAHGMQTLDQNL
KELVNQGMVSYEDAKLKAADPNNF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=632586 LQZ07_RS20165 WP_016401371.1 4366457..4367491(-) (pilT) [Agarivorans sp. B2Z047]
ATGGATGTTACTGAATTACTGGCCTTTAGTGTAAAACATAACGCGTCGGATCTACACCTATCTGCAGAATTGCCACCGAT
GATTCGGGTAGACGGCGAAGTGCGTAAAATTAACGTACCGGCATTAGAGCACAAACAAGTTCATAGTCTGATCTACGACA
TTATGAACGATAAGCAACGTAAAGAGTATGAAGAAAACCTCGAGATTGACTTCTCGTTTGAGGTTCCCGGTGTAGCGCGT
TTTCGTGTGAATGCCTTCCAACAAAGCCGTGGCGCGGCAGCGGTATTTCGTACCATTCCTTCAGAAGTATTGAGTTTAGA
GCAACTAGGTGCACCGGCTATTTTTAGGCAAATCGCCGAACACCCACGTGGTTTAGTGCTAGTAACTGGCCCAACCGGTT
CAGGTAAATCAACCACATTGGCGGCAATGATCGATTACATTAATGAGCAGCGTCACGAGCACATCCTTACCATTGAAGAC
CCGATAGAATTTGTGCACAAAAACAAAAACTGTTTGATTAACCAACGTGAAGTGCACCGCGATACCCACAGCTTTAACAA
TGCGCTACGTTCAGCGCTTCGTGAAGACCCGGATATTATTCTGGTTGGTGAATTACGTGACTTAGAAACCATTCGTTTAG
CACTAACCGCAGCCGAAACGGGTCACTTAGTATTTGGCACCTTGCACACCACTTCAGCAGCTAAAACCATTGACCGTGTG
ATTGACGTATTCCCAGCAGCAGAAAAAGACATGGTACGTTCCATGTTGTCGGAGTCGCTGCGTGCGGTAATTGCTCAAAC
TCTGCTTAAAAAACTGGGCGGCGGACGAGTGGCTGCTCACGAAATCATGACCGGTATTCCAGCTATTCGTAACTTGATTC
GTGAAGACAAAGTGGCGCAAATGTACTCGGTTATTCAAACCGGTATGGCGCACGGTATGCAGACCTTAGATCAAAACTTA
AAAGAGTTGGTGAACCAAGGCATGGTGTCGTATGAAGACGCTAAACTTAAAGCTGCAGATCCGAATAACTTCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9PK19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.942

100

0.799
  pilT Acinetobacter baumannii D1279779

79.942

100

0.799
  pilT Acinetobacter baumannii strain A118

79.942

100

0.799
  pilT Pseudomonas stutzeri DSM 10701

78.488

100

0.785
  pilT Pseudomonas aeruginosa PAK

78.198

100

0.782
  pilT Acinetobacter baylyi ADP1

77.907

100

0.779
  pilT Legionella pneumophila strain Lp02

75

100

0.75
  pilT Legionella pneumophila strain ERS1305867

75

100

0.75
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

75.074

97.965

0.735
  pilT Vibrio cholerae strain A1552

75.074

97.965

0.735
  pilT Neisseria meningitidis 8013

68.328

99.128

0.677
  pilT Neisseria gonorrhoeae MS11

68.035

99.128

0.674
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.435

100

0.506
  pilU Vibrio cholerae strain A1552

41.57

100

0.416
  pilU Pseudomonas stutzeri DSM 10701

41.159

100

0.413
  pilU Acinetobacter baylyi ADP1

40.173

100

0.404