Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LQZ07_RS20160 Genome accession   NZ_CP088080
Coordinates   4365330..4366448 (-) Length   372 a.a.
NCBI ID   WP_016401370.1    Uniprot ID   R9PJR7
Organism   Agarivorans sp. B2Z047     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4360330..4371448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQZ07_RS20135 (LQZ07_20135) - 4360815..4361537 (-) 723 WP_152784437.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LQZ07_RS20140 (LQZ07_20140) srmB 4361635..4362891 (+) 1257 WP_016401366.1 ATP-dependent RNA helicase SrmB -
  LQZ07_RS20145 (LQZ07_20145) - 4362954..4363700 (-) 747 WP_194164186.1 OmpA family protein -
  LQZ07_RS20150 (LQZ07_20150) - 4363909..4364376 (-) 468 WP_152784433.1 hypothetical protein -
  LQZ07_RS20155 (LQZ07_20155) yaaA 4364539..4365312 (-) 774 WP_152784431.1 peroxide stress protein YaaA -
  LQZ07_RS20160 (LQZ07_20160) pilU 4365330..4366448 (-) 1119 WP_016401370.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LQZ07_RS20165 (LQZ07_20165) pilT 4366457..4367491 (-) 1035 WP_016401371.1 type IV pilus twitching motility protein PilT Machinery gene
  LQZ07_RS20170 (LQZ07_20170) - 4367517..4368215 (+) 699 WP_152784429.1 YggS family pyridoxal phosphate-dependent enzyme -
  LQZ07_RS20175 (LQZ07_20175) proC 4368403..4369224 (+) 822 WP_152784428.1 pyrroline-5-carboxylate reductase -
  LQZ07_RS20180 (LQZ07_20180) - 4369242..4369787 (+) 546 WP_016401374.1 YggT family protein -
  LQZ07_RS20185 (LQZ07_20185) yggU 4369788..4370078 (+) 291 WP_016401375.1 DUF167 family protein YggU -
  LQZ07_RS20190 (LQZ07_20190) - 4370137..4370571 (+) 435 WP_152784426.1 DUF4426 domain-containing protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 41606.76 Da        Isoelectric Point: 6.0915

>NTDB_id=632585 LQZ07_RS20160 WP_016401370.1 4365330..4366448(-) (pilU) [Agarivorans sp. B2Z047]
MLLDELLSDMSERKASDLYLSVGVPPSAKVSGRLMPLNEQKLMPEHVMDMLAAIRTEAQLEAFVTGREANFAIARQGLGR
YRVSAFYQREQPSMVIRRIETDIPSFEQLQLPQILKEVGMSKRGLILFVGATGAGKSTTQASMIDYRNHNSSGHILTIED
PVEFMHKHAGCIVNQREVGIDTPSFDEALKNSLRQAPDVILIGEIRTRETMEFALQFSETGHLCMATLHANNANQALDRI
MHLVPEERHRQLCFDLSFNLRAIVAQQLVPTKDGNGRRGVFEILLNTPLAADLIRKGDMHKLKELMSKSREQGMLTFDQS
LFELFESGVIGYTEAIAHADSPNDLRLMIKLHGTEKSNNLDSGMLDGVTVDF

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=632585 LQZ07_RS20160 WP_016401370.1 4365330..4366448(-) (pilU) [Agarivorans sp. B2Z047]
ATGTTACTCGATGAGCTATTAAGCGATATGTCGGAGCGTAAAGCATCCGATTTATATCTATCGGTTGGGGTGCCGCCTAG
TGCTAAAGTGAGTGGCCGTTTAATGCCGCTGAATGAGCAAAAACTAATGCCAGAGCATGTCATGGATATGCTAGCTGCCA
TTCGCACAGAGGCTCAGCTAGAAGCCTTTGTTACTGGTCGTGAGGCAAACTTTGCCATCGCTCGCCAAGGCTTGGGCCGT
TACCGTGTGAGTGCTTTTTATCAACGCGAACAGCCAAGCATGGTAATTCGTCGTATTGAAACTGATATTCCAAGTTTTGA
GCAGCTGCAGTTGCCGCAAATTCTCAAAGAAGTAGGTATGTCGAAACGTGGTTTGATTTTGTTTGTTGGTGCTACCGGTG
CCGGTAAGTCAACCACTCAGGCCAGTATGATCGATTACCGTAATCACAATTCCAGTGGGCATATTCTTACCATTGAAGAC
CCGGTGGAATTTATGCACAAACATGCTGGTTGTATTGTTAACCAGCGTGAAGTGGGCATTGACACGCCGTCGTTTGATGA
AGCCTTGAAGAACTCATTGCGCCAAGCACCCGATGTGATTTTGATTGGTGAGATCCGTACCCGTGAGACCATGGAATTTG
CGTTGCAATTCTCTGAAACGGGTCACTTATGTATGGCTACCTTGCACGCCAACAACGCTAACCAAGCCCTCGACCGGATT
ATGCACTTAGTGCCAGAAGAGCGTCATCGCCAACTGTGTTTTGACTTATCATTCAACCTACGTGCGATTGTGGCTCAGCA
GTTAGTGCCAACCAAAGATGGCAATGGCCGTCGCGGGGTATTTGAAATTTTACTTAATACACCTTTAGCCGCGGATCTAA
TTCGTAAAGGTGATATGCATAAGCTCAAAGAGTTAATGAGTAAATCCCGCGAACAGGGCATGTTAACCTTCGACCAAAGC
TTGTTTGAATTGTTCGAAAGTGGCGTAATTGGCTATACCGAAGCTATTGCCCATGCTGATTCACCTAACGATCTTCGTTT
GATGATTAAATTGCATGGCACCGAAAAATCGAATAATTTAGACAGCGGAATGTTAGACGGTGTTACCGTCGATTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(112-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9PJR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

59.14

100

0.591
  pilU Vibrio cholerae strain A1552

56.452

100

0.565
  pilU Acinetobacter baylyi ADP1

57.66

96.505

0.556
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.691

92.204

0.384