Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY25_RS22520 Genome accession   NZ_CP087188
Coordinates   5031599..5032234 (-) Length   211 a.a.
NCBI ID   WP_032829396.1    Uniprot ID   -
Organism   Pseudomonas laurylsulfatiphila strain B21-025     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5026599..5037234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY25_RS22485 (LOY25_22450) - 5027001..5027471 (-) 471 WP_015096391.1 (2Fe-2S)-binding protein -
  LOY25_RS22490 (LOY25_22455) murB 5027713..5028732 (-) 1020 WP_258682136.1 UDP-N-acetylmuramate dehydrogenase -
  LOY25_RS22495 (LOY25_22460) - 5028729..5029193 (-) 465 WP_258682137.1 low molecular weight protein-tyrosine-phosphatase -
  LOY25_RS22500 (LOY25_22465) kdsB 5029193..5029957 (-) 765 WP_258682138.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY25_RS22505 (LOY25_22470) - 5029954..5030139 (-) 186 WP_003179363.1 Trm112 family protein -
  LOY25_RS22510 (LOY25_22475) lpxK 5030164..5031174 (-) 1011 WP_258682139.1 tetraacyldisaccharide 4'-kinase -
  LOY25_RS22515 (LOY25_22480) - 5031174..5031602 (-) 429 WP_258682140.1 ExbD/TolR family protein -
  LOY25_RS22520 (LOY25_22485) exbB 5031599..5032234 (-) 636 WP_032829396.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY25_RS22525 (LOY25_22490) comA 5032333..5034567 (-) 2235 WP_258682141.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY25_RS22530 (LOY25_22495) - 5034703..5035218 (+) 516 WP_007972350.1 DUF2062 domain-containing protein -
  LOY25_RS22535 (LOY25_22500) - 5035402..5036181 (-) 780 WP_007972352.1 ABC transporter permease -
  LOY25_RS22540 (LOY25_22505) - 5036178..5037110 (-) 933 WP_258682142.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23013.28 Da        Isoelectric Point: 6.8770

>NTDB_id=627663 LOY25_RS22520 WP_032829396.1 5031599..5032234(-) (exbB) [Pseudomonas laurylsulfatiphila strain B21-025]
MWELVKSGGWMMLPIILSSIVAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMMTNAAVLAGGISKALITTA
SGLIVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627663 LOY25_RS22520 WP_032829396.1 5031599..5032234(-) (exbB) [Pseudomonas laurylsulfatiphila strain B21-025]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGTGGCCATGGCCATCGTCGC
CGAACGTCTCTGGACTCTGCGCGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAGCTCAATAAGGAAAAACTCAAGGAACTGCGCGCCAACTCCCCGTTGGGCGAGATCCTGGCGGCCGGCCTGGCCAAC
TCAAAACATGGTCGCGAGATAATGAAAGAGTGCATTGAAGAGGCCGCAGCCCGGGTGATCCACGAGCTGGAGCGCTACAT
CAACGCACTGGGCACCATCGCCGCCATGGCGCCGTTGCTGGGTCTGCTGGGTACCGTGTTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGCACGGGCATGATGACCAACGCCGCCGTTCTGGCCGGCGGTATTTCCAAAGCCTTGATTACCACGGCT
TCGGGGCTGATCGTCGGTATCCCGGCGGTGTTCTTCCACCGGTTTCTGCAACGGCGCATCGATGAACTCGTCGTGGGCAT
GGAACAGGAGGCGATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGACGTTGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839