Detailed information NTG0627664

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY25_RS22525
• Genome accession: NZ_CP087188
• Coordinates: 5032333..5034567 (-)
• Length: 744 a.a.
• NCBI ID: WP_258682141.1
• Uniprot ID: -
• Organism: Pseudomonas laurylsulfatiphila strain B21-025
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5027333..5039567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY25_RS22490 (LOY25_22455)	murB	5027713..5028732 (-)	1020	WP_258682136.1	UDP-N-acetylmuramate dehydrogenase	-
LOY25_RS22495 (LOY25_22460)	-	5028729..5029193 (-)	465	WP_258682137.1	low molecular weight protein-tyrosine-phosphatase	-
LOY25_RS22500 (LOY25_22465)	kdsB	5029193..5029957 (-)	765	WP_258682138.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY25_RS22505 (LOY25_22470)	-	5029954..5030139 (-)	186	WP_003179363.1	Trm112 family protein	-
LOY25_RS22510 (LOY25_22475)	lpxK	5030164..5031174 (-)	1011	WP_258682139.1	tetraacyldisaccharide 4'-kinase	-
LOY25_RS22515 (LOY25_22480)	-	5031174..5031602 (-)	429	WP_258682140.1	ExbD/TolR family protein	-
LOY25_RS22520 (LOY25_22485)	exbB	5031599..5032234 (-)	636	WP_032829396.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY25_RS22525 (LOY25_22490)	comA	5032333..5034567 (-)	2235	WP_258682141.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY25_RS22530 (LOY25_22495)	-	5034703..5035218 (+)	516	WP_007972350.1	DUF2062 domain-containing protein	-
LOY25_RS22535 (LOY25_22500)	-	5035402..5036181 (-)	780	WP_007972352.1	ABC transporter permease	-
LOY25_RS22540 (LOY25_22505)	-	5036178..5037110 (-)	933	WP_258682142.1	ABC transporter ATP-binding protein	-
LOY25_RS22545 (LOY25_22510)	-	5037243..5037866 (-)	624	WP_258682143.1	glutathione S-transferase family protein	-
LOY25_RS22550 (LOY25_22515)	-	5037910..5038569 (-)	660	WP_104449028.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81472.64 Da
• Isoelectric Point: 9.5274

>NTDB_id=627664 LOY25_RS22525 WP_258682141.1 5032333..5034567(-) (comA) [Pseudomonas laurylsulfatiphila strain B21-025]
MRTGMMALALGLLTLRFLPALPPVWLWLAMPVAGLMLLPFRAYPVAFYLFGLSWACANAQWALDDRLPPALDGETRWVEG
RVTGLPRHDDGVVRFELTDIQSRRTRLPRQMRLSWYGGPSVNSGERWRLAVKLKRPVGLLNPQAFDYQAWLLAQHIGATG
TVKQGERLAPAQWAWRDGIRQRLQAVDAQGRGGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGVVYLL
IAGLARLGLWPNWLPWLPWACGLAFAAALGYGMLAGFGVPVRRACLMLGLVLLWRLRFRHLGAWWPLLLALCGILLLEPL
ASLQPGFWLSFAAVAVLILTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLILGLPISLSGPAANLLAVPWISLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIGGLFRGLALLAEVLPAWVPEAIPLGVWSLGALGAFLLLLPRGVPLRPLGWPLLLLLV
FPPRSTLPEGIAEVWQLDVGQGLAVLVRTRHHTLLYDAGPRFGELDQGERVVLPALRKLGVKGLDLMLISHAHADHAGGA
PAIAKGLPVKQVVSGEPSDLPVELQAGRCESGRQWTWDDVDFQLWHWPLAGDSNQNSCVLLIEANGERLLLSGDIDAAAE
RALLDSPLALPIDWLQAPHHGSRSSSSNDLLDVLQPKGALISRGQGNSFGHPHPTVIARYQKRGMAIYDSVEQGAIRLQL
GRFEPPWTMRQERRFWRDPPPSNP

Nucleotide

• Length: 2235 bp

>NTDB_id=627664 LOY25_RS22525 WP_258682141.1 5032333..5034567(-) (comA) [Pseudomonas laurylsulfatiphila strain B21-025]
ATGCGCACAGGGATGATGGCGTTGGCGCTGGGTCTGCTGACTTTGCGTTTTTTACCGGCTTTGCCGCCGGTCTGGTTGTG
GCTGGCGATGCCGGTGGCGGGTTTGATGTTGTTGCCGTTCAGGGCGTATCCGGTGGCGTTTTACCTGTTCGGTCTGAGTT
GGGCCTGCGCGAATGCGCAATGGGCGCTGGATGACCGGTTGCCGCCGGCGCTGGACGGAGAAACCCGCTGGGTCGAAGGA
CGGGTCACAGGTTTGCCCCGGCATGACGACGGTGTCGTGCGTTTCGAATTGACCGACATCCAGTCCCGGCGTACCCGGCT
GCCGCGGCAAATGCGCCTGTCCTGGTACGGCGGGCCGTCGGTGAACAGTGGTGAGCGCTGGCGTCTGGCAGTCAAATTGA
AGCGTCCGGTGGGGCTCCTCAATCCGCAGGCGTTCGATTACCAGGCCTGGTTGCTGGCACAACACATCGGGGCGACCGGG
ACGGTCAAGCAGGGCGAACGCCTTGCGCCAGCCCAATGGGCCTGGCGCGATGGCATCCGCCAGCGTTTGCAAGCGGTGGA
TGCCCAGGGGCGGGGCGGCGCGTTGACGGCGTTGGTGCTCGGGGACGGTGCCGGGCTGAGTCGCGAAGACTGGCAGGTAT
TGCAGGACACCGGCACGGTGCATCTGTTGGTGATTTCCGGGCAGCACATCGGCTTGCTGGCGGGCGTCGTGTATCTGCTG
ATAGCCGGCCTGGCCCGCCTGGGGTTATGGCCGAACTGGCTGCCATGGTTGCCTTGGGCGTGTGGCCTGGCATTCGCCGC
GGCGCTCGGTTACGGGATGCTGGCCGGATTCGGGGTGCCGGTGCGACGAGCCTGCCTGATGCTGGGCCTGGTGTTGCTGT
GGCGTCTGCGGTTTCGTCATCTCGGTGCGTGGTGGCCGCTATTACTGGCACTCTGCGGCATTTTGCTGCTGGAGCCGCTG
GCGAGTCTTCAGCCTGGTTTCTGGCTGTCTTTCGCAGCCGTGGCCGTCTTGATATTGACCTTCGGCGGTCGGTTGGGCCC
CTGGCGATGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGATTGCAATCGGATTGTGCCCGTTACTGTTGATACTGGGAT
TGCCGATCAGCCTTAGCGGTCCGGCAGCCAATTTACTGGCGGTGCCGTGGATCAGTCTGGTGGTGTTGCCACCGGCCTTG
CTCGGGACATTGCTGTTGCCGGTGCCCTATGTGGGCGAGGGCCTGTTGTGGCTGGCGGGCGGATTGATTGGTGGGTTGTT
CAGGGGCCTGGCGTTGTTGGCCGAGGTGCTACCCGCGTGGGTGCCGGAGGCGATTCCTTTGGGGGTATGGAGCCTCGGCG
CGCTGGGCGCTTTTCTGCTGCTGTTGCCGCGTGGCGTTCCGCTGCGCCCGTTGGGTTGGCCTCTGCTGCTGTTGCTGGTA
TTTCCACCACGGTCAACGCTGCCGGAAGGCATCGCTGAAGTCTGGCAGCTGGACGTGGGGCAGGGGTTGGCTGTTCTGGT
GCGAACCCGGCATCACACCTTGCTGTATGACGCCGGACCGCGATTCGGTGAACTCGATCAGGGGGAGCGGGTGGTGCTGC
CGGCGTTGCGCAAACTCGGGGTGAAGGGCCTCGACCTGATGCTGATCAGCCACGCCCATGCCGATCATGCCGGCGGTGCC
CCGGCGATTGCCAAGGGCTTGCCGGTGAAACAGGTGGTCAGTGGTGAACCGTCAGACTTGCCTGTGGAGTTGCAGGCCGG
GCGGTGTGAGAGTGGCCGGCAATGGACCTGGGATGACGTCGATTTCCAGCTTTGGCACTGGCCATTGGCCGGCGACAGCA
ACCAGAACTCTTGTGTCTTGTTGATCGAGGCCAATGGCGAACGATTGCTGTTGAGTGGCGACATCGATGCCGCCGCCGAA
AGAGCCCTGCTGGACAGTCCGTTGGCCCTGCCCATCGACTGGCTGCAGGCGCCACACCATGGCAGTCGCAGTTCGTCATC
TAACGACCTGCTGGATGTCCTGCAACCCAAAGGGGCGCTGATCTCCCGCGGCCAGGGCAATTCGTTTGGCCATCCGCATC
CCACGGTCATCGCGCGTTATCAAAAACGCGGGATGGCGATCTACGACAGCGTCGAACAGGGTGCCATTCGTCTGCAACTG
GGGCGCTTCGAGCCACCGTGGACGATGCGCCAGGAACGGCGTTTCTGGCGCGATCCGCCGCCCTCGAACCCATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-682)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-461)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.534	95.833	0.609
comA	Ralstonia pseudosolanacearum GMI1000	33.253	100	0.37