Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LMT64_RS06105 Genome accession   NZ_CP086380
Coordinates   1206979..1208199 (-) Length   406 a.a.
NCBI ID   WP_126350932.1    Uniprot ID   A0A3S0KHX7
Organism   Deinococcus radiophilus strain ATCC 27603     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1201979..1213199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMT64_RS06090 (LMT64_06090) clpP 1202369..1202968 (+) 600 WP_126350929.1 ATP-dependent Clp protease proteolytic subunit -
  LMT64_RS06095 (LMT64_06095) clpX 1202965..1204179 (+) 1215 WP_126350930.1 ATP-dependent Clp protease ATP-binding subunit ClpX -
  LMT64_RS06100 (LMT64_06100) lon 1204332..1206830 (+) 2499 WP_126350931.1 endopeptidase La -
  LMT64_RS06105 (LMT64_06105) pilT 1206979..1208199 (-) 1221 WP_126350932.1 type IV pilus twitching motility protein PilT Machinery gene
  LMT64_RS06110 (LMT64_06110) pilB 1208245..1210875 (-) 2631 WP_126350933.1 type II/IV secretion system protein Machinery gene
  LMT64_RS06115 (LMT64_06115) - 1210954..1211493 (-) 540 WP_126350934.1 YqeG family HAD IIIA-type phosphatase -
  LMT64_RS06120 (LMT64_06120) - 1211490..1212236 (-) 747 WP_126350935.1 polyphenol oxidase family protein -
  LMT64_RS06125 (LMT64_06125) - 1212338..1213153 (+) 816 WP_126350936.1 enoyl-ACP reductase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44217.38 Da        Isoelectric Point: 6.5986

>NTDB_id=624656 LMT64_RS06105 WP_126350932.1 1206979..1208199(-) (pilT) [Deinococcus radiophilus strain ATCC 27603]
MTQLAPDITDILKYAAENDASDVILTVGLPPQFKLQGRYEVHDDYSVLKPVDTRKLMYSMMNEKQQRTFEERRELDFSFA
LGEKARFRVNAFMQRGNVGGVMRLIPTKVKSVQEMGLPQNVIDIANAPRGLVLVTGPTGSGKSTTLAAMIDHINSTKRLH
IVTIEDPIEFMHDHKQSIINQREVHADTMSFENALRASLRQAPDVILVGEMRDYETIKAAVTAAETGHLVMGTLHTNSAP
ESIDRIVDVFPEEQQEQIRVQLANNLVAIMTQQLLPRADGSGRILAYELMIANPAIRALIREGKTYQIVSSMQTGTREGM
ITMDTYLAQLYHRRVISYDTGLERAVDSKEFARLAADKSADTGGSMPAAAMAGGYGGGAASGGGAFGRGAAAPAGAGDST
KTFGRG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=624656 LMT64_RS06105 WP_126350932.1 1206979..1208199(-) (pilT) [Deinococcus radiophilus strain ATCC 27603]
ATGACTCAACTTGCCCCCGACATTACCGATATCCTGAAATACGCCGCCGAGAACGATGCCTCGGACGTGATCCTGACCGT
AGGCCTGCCGCCCCAGTTCAAGTTGCAGGGCCGCTATGAGGTTCACGATGATTACAGCGTGCTCAAGCCGGTGGATACCC
GCAAGCTGATGTATTCGATGATGAACGAAAAGCAGCAGCGCACCTTCGAAGAACGCCGTGAACTGGACTTCAGCTTTGCG
CTGGGTGAAAAGGCCCGCTTTCGTGTGAACGCATTTATGCAGCGTGGCAACGTGGGTGGAGTCATGCGTCTGATTCCCAC
CAAGGTCAAGTCGGTCCAGGAGATGGGGTTGCCACAGAATGTTATTGACATCGCCAATGCGCCGCGTGGCCTGGTGTTGG
TCACTGGACCGACCGGCTCGGGAAAATCCACCACCCTGGCGGCCATGATCGACCACATCAACTCCACCAAGCGTCTGCAC
ATCGTGACCATTGAAGACCCGATTGAGTTCATGCACGATCACAAGCAGAGCATCATCAATCAACGTGAGGTGCATGCCGA
CACCATGAGTTTCGAGAACGCTCTGCGTGCCTCGTTACGTCAAGCGCCTGACGTGATTCTGGTGGGCGAAATGCGTGACT
ACGAGACGATCAAGGCCGCCGTGACCGCCGCAGAAACTGGCCACCTGGTGATGGGTACGCTGCACACCAACTCGGCTCCC
GAATCCATTGACCGTATCGTGGACGTGTTCCCCGAGGAGCAGCAAGAGCAGATCCGCGTGCAGCTGGCCAACAACCTGGT
GGCCATCATGACCCAGCAGCTGCTGCCCCGCGCTGACGGCTCTGGGCGGATTCTGGCATATGAACTGATGATCGCCAACC
CGGCCATTCGCGCCCTGATCCGTGAGGGCAAGACCTACCAGATCGTCAGCTCCATGCAGACCGGTACCCGCGAGGGCATG
ATCACGATGGACACCTACCTGGCGCAGCTGTACCACCGCCGCGTGATCTCTTACGACACCGGCCTGGAACGTGCTGTGGA
CAGCAAGGAATTCGCCCGTCTGGCGGCCGACAAGAGTGCGGATACCGGCGGCAGTATGCCCGCTGCGGCGATGGCCGGTG
GTTATGGTGGCGGTGCTGCGTCGGGCGGGGGCGCGTTTGGACGCGGCGCAGCGGCTCCAGCAGGCGCAGGCGACAGCACC
AAGACCTTTGGGCGCGGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(33-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S0KHX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

77.062

95.567

0.736
  pilT Acinetobacter nosocomialis M2

51.884

84.975

0.441
  pilT Acinetobacter baumannii D1279779

51.884

84.975

0.441
  pilT Acinetobacter baumannii strain A118

51.884

84.975

0.441
  pilT Acinetobacter baylyi ADP1

52.353

83.744

0.438
  pilT Pseudomonas stutzeri DSM 10701

51.594

84.975

0.438
  pilT Pseudomonas aeruginosa PAK

50.575

85.714

0.434
  pilT Neisseria meningitidis 8013

50.143

85.961

0.431
  pilT Neisseria gonorrhoeae MS11

49.855

84.975

0.424
  pilT Legionella pneumophila strain ERS1305867

49.275

84.975

0.419
  pilT Legionella pneumophila strain Lp02

49.275

84.975

0.419
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.151

81.527

0.409
  pilT Vibrio cholerae strain A1552

50.151

81.527

0.409
  pilU Pseudomonas stutzeri DSM 10701

42.938

87.192

0.374
  pilU Acinetobacter baylyi ADP1

42.297

87.931

0.372
  pilU Vibrio cholerae strain A1552

42.241

85.714

0.362