Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | LG327_RS07105 | Genome accession | NZ_CP085217 |
| Coordinates | 1520473..1521507 (+) | Length | 344 a.a. |
| NCBI ID | WP_404367751.1 | Uniprot ID | - |
| Organism | Marinobacter sp. strain QJJ-212 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1515473..1526507
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG327_RS07085 (LG327_07080) | - | 1515909..1517873 (-) | 1965 | WP_404367740.1 | dynamin family protein | - |
| LG327_RS07090 (LG327_07085) | - | 1518109..1518693 (-) | 585 | WP_404367742.1 | YggT family protein | - |
| LG327_RS07095 (LG327_07090) | proC | 1518770..1519618 (-) | 849 | WP_404367745.1 | pyrroline-5-carboxylate reductase | - |
| LG327_RS07100 (LG327_07095) | - | 1519673..1520377 (-) | 705 | WP_404367748.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| LG327_RS07105 (LG327_07100) | pilT | 1520473..1521507 (+) | 1035 | WP_404367751.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LG327_RS07110 (LG327_07105) | pilU | 1521544..1522665 (+) | 1122 | WP_404367754.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LG327_RS07115 (LG327_07110) | polA | 1522720..1525497 (-) | 2778 | WP_404367757.1 | DNA polymerase I | - |
| LG327_RS07120 (LG327_07115) | - | 1525614..1525955 (+) | 342 | WP_404367759.1 | DUF2782 domain-containing protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 37893.72 Da Isoelectric Point: 6.7782
>NTDB_id=615942 LG327_RS07105 WP_404367751.1 1520473..1521507(+) (pilT) [Marinobacter sp. strain QJJ-212]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPMAHKEVHGLIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGSGAVFRTIPSKVLTMEDLGMGQIFKDVSSVPRGLVLVTGPTGSGKSTTLAAMLDYINDTRYEHILTVED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
VDVFPAAEKSMVRSMLSESLQAVVSQTLMKKMGGGRIAAHEIMIGTAAIRNLIREDKVAQMYSAIQTGGSLGMTTLDQTL
LKLLQKGLISREAARAKAKMPDNF
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPMAHKEVHGLIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGSGAVFRTIPSKVLTMEDLGMGQIFKDVSSVPRGLVLVTGPTGSGKSTTLAAMLDYINDTRYEHILTVED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
VDVFPAAEKSMVRSMLSESLQAVVSQTLMKKMGGGRIAAHEIMIGTAAIRNLIREDKVAQMYSAIQTGGSLGMTTLDQTL
LKLLQKGLISREAARAKAKMPDNF
Nucleotide
Download Length: 1035 bp
>NTDB_id=615942 LG327_RS07105 WP_404367751.1 1520473..1521507(+) (pilT) [Marinobacter sp. strain QJJ-212]
ATGGATATTACTGAACTGCTTGCTTTCTCGGCAAAACAGGGTGCGTCCGACTTACACCTGTCCGCCGGGCTTCCCCCGAT
GATCCGCGTTGATGGTGACGTTCGCAGAATTAACCTCCCGCCCATGGCCCACAAGGAAGTGCACGGGCTGATTTACGACA
TCATGAACGACAAGCAGCGCAAGGATTTTGAAGAATTCCTTGAAACCGACTTTTCGTTTGAAGTACCTGGTGTTGCCCGT
TTCCGTGTCAACGCTTTCAACCAGAACCGGGGTTCCGGCGCGGTCTTCCGGACCATCCCTTCCAAGGTGCTGACCATGGA
AGATCTTGGCATGGGCCAGATCTTCAAGGATGTCTCCTCGGTGCCCCGCGGGCTGGTGCTGGTGACCGGGCCAACCGGTT
CCGGCAAGTCCACCACCCTGGCAGCGATGCTCGATTACATCAACGACACCCGTTATGAGCATATTCTGACGGTCGAGGAC
CCGATCGAATTCGTCCACGAATCCAAAAAGTGTCTGGTGAACCAGCGCGAGGTCCACAGGGATACTCTGGGCTTCAACGA
GGCCCTGCGCTCCGCTCTCCGGGAAGATCCGGACATCATCCTGGTGGGTGAGTTGCGGGACCTGGAGACTATCCGCCTTG
CGCTTACCGCGGCGGAAACCGGCCACCTGGTATTCGGCACGCTGCACACCACCTCCGCCGCCAAGACGATTGACCGGATA
GTGGACGTATTCCCCGCCGCCGAGAAGTCGATGGTGCGGTCGATGCTGTCGGAGTCCCTGCAGGCGGTTGTTTCCCAGAC
CCTGATGAAGAAAATGGGGGGCGGGCGGATTGCAGCCCATGAAATCATGATTGGTACTGCGGCTATCCGGAACCTGATCC
GGGAAGACAAGGTCGCGCAGATGTATTCAGCCATCCAGACCGGTGGCTCCCTTGGCATGACCACGCTCGACCAGACCCTT
CTGAAACTGCTGCAGAAAGGACTGATTTCCCGCGAGGCGGCCAGGGCCAAGGCCAAGATGCCGGACAACTTCTAG
ATGGATATTACTGAACTGCTTGCTTTCTCGGCAAAACAGGGTGCGTCCGACTTACACCTGTCCGCCGGGCTTCCCCCGAT
GATCCGCGTTGATGGTGACGTTCGCAGAATTAACCTCCCGCCCATGGCCCACAAGGAAGTGCACGGGCTGATTTACGACA
TCATGAACGACAAGCAGCGCAAGGATTTTGAAGAATTCCTTGAAACCGACTTTTCGTTTGAAGTACCTGGTGTTGCCCGT
TTCCGTGTCAACGCTTTCAACCAGAACCGGGGTTCCGGCGCGGTCTTCCGGACCATCCCTTCCAAGGTGCTGACCATGGA
AGATCTTGGCATGGGCCAGATCTTCAAGGATGTCTCCTCGGTGCCCCGCGGGCTGGTGCTGGTGACCGGGCCAACCGGTT
CCGGCAAGTCCACCACCCTGGCAGCGATGCTCGATTACATCAACGACACCCGTTATGAGCATATTCTGACGGTCGAGGAC
CCGATCGAATTCGTCCACGAATCCAAAAAGTGTCTGGTGAACCAGCGCGAGGTCCACAGGGATACTCTGGGCTTCAACGA
GGCCCTGCGCTCCGCTCTCCGGGAAGATCCGGACATCATCCTGGTGGGTGAGTTGCGGGACCTGGAGACTATCCGCCTTG
CGCTTACCGCGGCGGAAACCGGCCACCTGGTATTCGGCACGCTGCACACCACCTCCGCCGCCAAGACGATTGACCGGATA
GTGGACGTATTCCCCGCCGCCGAGAAGTCGATGGTGCGGTCGATGCTGTCGGAGTCCCTGCAGGCGGTTGTTTCCCAGAC
CCTGATGAAGAAAATGGGGGGCGGGCGGATTGCAGCCCATGAAATCATGATTGGTACTGCGGCTATCCGGAACCTGATCC
GGGAAGACAAGGTCGCGCAGATGTATTCAGCCATCCAGACCGGTGGCTCCCTTGGCATGACCACGCTCGACCAGACCCTT
CTGAAACTGCTGCAGAAAGGACTGATTTCCCGCGAGGCGGCCAGGGCCAAGGCCAAGATGCCGGACAACTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
89.244 |
100 |
0.892 |
| pilT | Pseudomonas stutzeri DSM 10701 |
88.372 |
100 |
0.884 |
| pilT | Acinetobacter nosocomialis M2 |
83.14 |
100 |
0.831 |
| pilT | Acinetobacter baumannii D1279779 |
83.14 |
100 |
0.831 |
| pilT | Acinetobacter baumannii strain A118 |
83.14 |
100 |
0.831 |
| pilT | Acinetobacter baylyi ADP1 |
82.267 |
100 |
0.823 |
| pilT | Legionella pneumophila strain Lp02 |
76.331 |
98.256 |
0.75 |
| pilT | Legionella pneumophila strain ERS1305867 |
76.331 |
98.256 |
0.75 |
| pilT | Neisseria gonorrhoeae MS11 |
67.059 |
98.837 |
0.663 |
| pilT | Neisseria meningitidis 8013 |
67.059 |
98.837 |
0.663 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
65.882 |
98.837 |
0.651 |
| pilT | Vibrio cholerae strain A1552 |
65.882 |
98.837 |
0.651 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.014 |
100 |
0.512 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.194 |
97.384 |
0.401 |
| pilU | Acinetobacter baylyi ADP1 |
39.017 |
100 |
0.392 |
| pilU | Vibrio cholerae strain A1552 |
39.701 |
97.384 |
0.387 |