Detailed information NTG0615943

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LG327_RS07110
• Genome accession: NZ_CP085217
• Coordinates: 1521544..1522665 (+)
• Length: 373 a.a.
• NCBI ID: WP_404367754.1
• Uniprot ID: -
• Organism: Marinobacter sp. strain QJJ-212
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1516544..1527665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG327_RS07090 (LG327_07085)	-	1518109..1518693 (-)	585	WP_404367742.1	YggT family protein	-
LG327_RS07095 (LG327_07090)	proC	1518770..1519618 (-)	849	WP_404367745.1	pyrroline-5-carboxylate reductase	-
LG327_RS07100 (LG327_07095)	-	1519673..1520377 (-)	705	WP_404367748.1	YggS family pyridoxal phosphate-dependent enzyme	-
LG327_RS07105 (LG327_07100)	pilT	1520473..1521507 (+)	1035	WP_404367751.1	type IV pilus twitching motility protein PilT	Machinery gene
LG327_RS07110 (LG327_07105)	pilU	1521544..1522665 (+)	1122	WP_404367754.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LG327_RS07115 (LG327_07110)	polA	1522720..1525497 (-)	2778	WP_404367757.1	DNA polymerase I	-
LG327_RS07120 (LG327_07115)	-	1525614..1525955 (+)	342	WP_404367759.1	DUF2782 domain-containing protein	-
LG327_RS07125 (LG327_07120)	-	1526129..1526551 (+)	423	WP_404367761.1	hypothetical protein	-
LG327_RS07130 (LG327_07125)	-	1526659..1527318 (-)	660	WP_404367763.1	DUF4124 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 41535.66 Da
• Isoelectric Point: 6.5753

>NTDB_id=615943 LG327_RS07110 WP_404367754.1 1521544..1522665(+) (pilU) [Marinobacter sp. strain QJJ-212]
MDFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKVLPVTKNALTPEQTREFVYGSMNDKQRAEFDETQECNFAISERGVGR
FRVSAFFQRNLCGMVLRRIEVKIPQLDELGLPDIIKDLAMTKRGLIMFVGATGTGKSTSLAAMIGHRNRNSRGHIISIED
PIEFVHQHHSCIVTQREVGVDTESFEVALKNTLRQAPDVILIGEVRTRQTMEYSVQFAETGHLCLATLHANNANQALDRI
IQFFHPDQHNQIWMDLSLNLRAIVAQQLIPTPDGKGRRAVIEVLINTPLVADIIRKGDVHKLKELMAKSGEAGMRTFDQA
LYELYAEGAITYEDALAHADSANDLRLMIKLGTDAQGADRLSQSIDKLSIQGD

Nucleotide

• Length: 1122 bp

>NTDB_id=615943 LG327_RS07110 WP_404367754.1 1521544..1522665(+) (pilU) [Marinobacter sp. strain QJJ-212]
ATGGATTTTGAAAAACTGCTTCGTCTGATGGTCGAAAAAGGCGGTTCAGACCTTTTTATCACGGCGGGTGTGCCGCCCAG
CATGAAGGTCAACGGCAAAGTGCTGCCTGTGACCAAAAATGCACTGACTCCGGAGCAGACCCGGGAGTTTGTTTATGGCT
CCATGAACGACAAGCAGCGGGCCGAGTTCGACGAAACCCAGGAGTGCAACTTCGCCATCAGTGAACGGGGGGTCGGCCGT
TTCCGGGTCAGTGCGTTTTTCCAGCGCAACCTCTGCGGCATGGTGCTGCGCCGGATCGAGGTGAAGATTCCCCAGCTGGA
CGAGCTTGGCCTGCCGGACATCATCAAGGACCTGGCCATGACGAAGCGGGGCCTGATTATGTTTGTGGGGGCCACAGGCA
CAGGCAAGTCCACTTCGCTGGCGGCGATGATCGGCCACCGCAACCGCAACAGCCGCGGTCACATCATCTCCATTGAGGAT
CCCATTGAATTCGTTCACCAGCATCACAGCTGTATCGTGACGCAGCGGGAAGTTGGGGTGGACACCGAAAGCTTTGAGGT
GGCCCTCAAGAACACCCTGCGGCAGGCGCCCGACGTGATTCTGATCGGGGAGGTGCGCACGCGGCAGACCATGGAATACT
CAGTGCAGTTCGCCGAAACCGGCCATCTGTGTCTCGCCACCCTGCACGCAAACAACGCCAACCAGGCTCTGGACCGGATT
ATCCAGTTCTTTCATCCTGATCAGCACAACCAGATCTGGATGGACCTTTCCCTGAACCTCCGGGCCATAGTAGCCCAACA
GCTGATCCCTACGCCGGATGGCAAGGGGCGCCGGGCGGTTATTGAAGTGCTTATCAATACACCGCTGGTGGCAGACATCA
TCCGCAAGGGTGATGTGCACAAGCTGAAAGAGCTTATGGCCAAGTCCGGGGAAGCGGGCATGCGTACCTTCGATCAGGCC
CTGTACGAGCTGTACGCCGAAGGTGCCATTACCTACGAGGACGCTCTGGCTCATGCCGATTCCGCCAACGATCTGAGGCT
GATGATCAAGCTGGGCACAGACGCACAGGGAGCCGACCGACTGTCGCAAAGCATCGACAAGCTGTCGATCCAGGGCGACT
GA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (114-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	78.711	95.71	0.753
pilU	Acinetobacter baylyi ADP1	62.334	100	0.63
pilU	Vibrio cholerae strain A1552	55.405	99.196	0.55
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.69	95.174	0.397
pilT	Acinetobacter baumannii D1279779	40.299	89.812	0.362
pilT	Acinetobacter baumannii strain A118	40.299	89.812	0.362
pilT	Pseudomonas aeruginosa PAK	40.299	89.812	0.362