Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCH17_RS09715 Genome accession   NZ_CP083944
Coordinates   2131316..2131894 (+) Length   192 a.a.
NCBI ID   WP_011707639.1    Uniprot ID   A0AAX0XSG5
Organism   Aeromonas hydrophila strain CSUSB2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2126316..2136894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH17_RS09705 (LCH17_09705) uvrA 2127209..2130037 (-) 2829 WP_073351998.1 excinuclease ABC subunit UvrA -
  LCH17_RS09710 (LCH17_09710) - 2130133..2130792 (-) 660 WP_224481290.1 LuxR C-terminal-related transcriptional regulator -
  LCH17_RS09715 (LCH17_09715) ssb 2131316..2131894 (+) 579 WP_011707639.1 single-stranded DNA-binding protein Machinery gene
  LCH17_RS09720 (LCH17_09720) - 2132062..2132820 (+) 759 WP_073352002.1 ABC transporter substrate-binding protein -
  LCH17_RS22710 - 2132901..2133026 (-) 126 WP_257721615.1 hypothetical protein -
  LCH17_RS09725 (LCH17_09725) - 2133477..2134355 (+) 879 WP_073352004.1 cation diffusion facilitator family transporter -
  LCH17_RS09730 (LCH17_09730) - 2134505..2134789 (+) 285 WP_024946369.1 DUF3811 domain-containing protein -
  LCH17_RS09735 (LCH17_09735) cspA 2135189..2135401 (+) 213 WP_011707644.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21161.56 Da        Isoelectric Point: 5.9247

>NTDB_id=608729 LCH17_RS09715 WP_011707639.1 2131316..2131894(+) (ssb) [Aeromonas hydrophila strain CSUSB2]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGGAGQGMGGQSQGNWGQQQGMQSQQPMNQARPAQAPQQNMQ
QQGGYARPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=608729 LCH17_RS09715 WP_011707639.1 2131316..2131894(+) (ssb) [Aeromonas hydrophila strain CSUSB2]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAATATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAAGTCTATGTT
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAAAGCGGCCAGGAGCGTTACACCACCGAAGTGCTGGTCGATGGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGCGCCGGCCAAGGCATGGGTGGCCAGTCTCAGGGCAACT
GGGGTCAGCAGCAGGGCATGCAGTCCCAGCAGCCGATGAACCAGGCGCGTCCTGCCCAGGCTCCGCAGCAGAACATGCAG
CAACAGGGCGGCTACGCTCGCCCGGCCCAGCAGCCGCAGTCTGCACCGCCGGTGTACAATGAGCCGCCGATGGACTTCGA
CGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.497

100

0.682
  ssb Glaesserella parasuis strain SC1401

53.684

98.958

0.531
  ssb Neisseria meningitidis MC58

47.917

100

0.479
  ssb Neisseria gonorrhoeae MS11

47.895

98.958

0.474