Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   K8O90_RS09610 Genome accession   NZ_CP082881
Coordinates   1599796..1600311 (+) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter coli strain FDAARGOS_1465     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594796..1605311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O90_RS09585 (K8O90_09520) - 1595256..1595594 (+) 339 WP_002852397.1 hypothetical protein -
  K8O90_RS09590 (K8O90_09525) - 1595603..1596328 (+) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  K8O90_RS09595 (K8O90_09530) dxr 1596325..1597395 (+) 1071 WP_002871960.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  K8O90_RS09600 (K8O90_09535) - 1597397..1598791 (+) 1395 WP_002865638.1 M99 family carboxypeptidase catalytic domain-containing protein -
  K8O90_RS09605 (K8O90_09540) tsaD 1598788..1599795 (+) 1008 WP_002865639.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  K8O90_RS09610 (K8O90_09545) ctsG 1599796..1600311 (+) 516 WP_002799196.1 type II secretion system protein Machinery gene
  K8O90_RS09615 (K8O90_09550) - 1600311..1601552 (+) 1242 WP_002864247.1 DUF2920 family protein -
  K8O90_RS09620 (K8O90_09555) - 1601562..1603385 (+) 1824 WP_004297740.1 motility associated factor glycosyltransferase family protein -
  K8O90_RS09625 (K8O90_09560) - 1603382..1605199 (+) 1818 WP_004297673.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=603323 K8O90_RS09610 WP_002799196.1 1599796..1600311(+) (ctsG) [Campylobacter coli strain FDAARGOS_1465]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=603323 K8O90_RS09610 WP_002799196.1 1599796..1600311(+) (ctsG) [Campylobacter coli strain FDAARGOS_1465]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942