Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K8O90_RS09565 Genome accession   NZ_CP082881
Coordinates   1591216..1592184 (-) Length   322 a.a.
NCBI ID   WP_044600574.1    Uniprot ID   -
Organism   Campylobacter coli strain FDAARGOS_1465     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1586216..1597184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O90_RS09545 (K8O90_09480) - 1587731..1588363 (-) 633 WP_002792136.1 membrane protein -
  K8O90_RS09550 (K8O90_09485) - 1588529..1589518 (-) 990 WP_173777380.1 siderophore ABC transporter substrate-binding protein -
  K8O90_RS09555 (K8O90_09490) - 1589533..1590288 (-) 756 WP_042963747.1 ABC transporter ATP-binding protein -
  K8O90_RS09560 (K8O90_09495) - 1590285..1591223 (-) 939 WP_223375342.1 iron chelate uptake ABC transporter family permease subunit -
  K8O90_RS09565 (K8O90_09500) ceuB 1591216..1592184 (-) 969 WP_044600574.1 ABC transporter permease Machinery gene
  K8O90_RS09570 (K8O90_09505) - 1592317..1593312 (-) 996 WP_002825231.1 phospholipase A -
  K8O90_RS09575 (K8O90_09510) - 1593309..1593884 (-) 576 WP_002825232.1 molybdenum cofactor guanylyltransferase -
  K8O90_RS09580 (K8O90_09515) - 1593947..1595254 (+) 1308 WP_223375344.1 NFACT family protein -
  K8O90_RS09585 (K8O90_09520) - 1595256..1595594 (+) 339 WP_002852397.1 hypothetical protein -
  K8O90_RS09590 (K8O90_09525) - 1595603..1596328 (+) 726 WP_002858027.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35507.39 Da        Isoelectric Point: 9.5069

>NTDB_id=603322 K8O90_RS09565 WP_044600574.1 1591216..1592184(-) (ceuB) [Campylobacter coli strain FDAARGOS_1465]
MLFKHLFSLNILLILLVVFGMISLFIGVIRINLDDIFSLSATQLEIILLTRIPRLVVILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGISYNTILFLGLIIVSIITSVV
IVSVGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=603322 K8O90_RS09565 WP_044600574.1 1591216..1592184(-) (ceuB) [Campylobacter coli strain FDAARGOS_1465]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCGCTACCCAGCTTGAAATCATTTTACTTACAAGAATTCCAA
GGCTTGTTGTAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCCCCAACTACCGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTGCAGGAGCTTC
TTTTTTTACTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGCTTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAATTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCGTTGGAGTTATACCTTTTTTAGGTCTCATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGGCTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTGATCTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.752

100

0.898