Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NC516_RS00365 Genome accession   NZ_CP099485
Coordinates   70331..71137 (+) Length   268 a.a.
NCBI ID   WP_016264363.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 65331..76137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS00345 (NC516_00345) yycF 65528..66241 (+) 714 WP_011373790.1 response regulator YycF -
  NC516_RS00350 (NC516_00350) walK 66251..68149 (+) 1899 WP_011373791.1 cell wall metabolism sensor histidine kinase WalK -
  NC516_RS00355 (NC516_00355) yycH 68139..69470 (+) 1332 WP_035147594.1 two-component system activity regulator YycH -
  NC516_RS00360 (NC516_00360) - 69475..70296 (+) 822 WP_035147596.1 two-component system regulatory protein YycI -
  NC516_RS00365 (NC516_00365) vicX 70331..71137 (+) 807 WP_016264363.1 MBL fold metallo-hydrolase Regulator
  NC516_RS00370 (NC516_00370) htrA 71271..72530 (+) 1260 WP_025016471.1 trypsin-like peptidase domain-containing protein Regulator
  NC516_RS00375 (NC516_00375) rlmH 73074..73553 (+) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NC516_RS00380 (NC516_00380) - 73693..74352 (+) 660 WP_025016470.1 hypothetical protein -
  NC516_RS00385 (NC516_00385) add 74409..75434 (-) 1026 WP_035147601.1 adenosine deaminase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29695.31 Da        Isoelectric Point: 5.0059

>NTDB_id=601432 NC516_RS00365 WP_016264363.1 70331..71137(+) (vicX) [Latilactobacillus sakei strain WiKim0095]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKDVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=601432 NC516_RS00365 WP_016264363.1 70331..71137(+) (vicX) [Latilactobacillus sakei strain WiKim0095]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGACGCGGGAATGAGCGGTAAACGCGTTCAGGATTTAATGCACAGTATCGGTCGGGATTTAAAGG
ATGTTGACAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGTGGCGTGGGTGTTTTAGCCCGCCGGTATGGGATT
GATGTGTATGCTAACCAACCGACTTGGGATGCGATGGCGTCAATTATTGGGACCGTTCCTGATGAACATAAGCACGTCTT
TGAGATGGGTAAAACCAAAACACTCGGTGATATCGATGTTGAAAGTTATGGCGTTTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAATAACCGAGCCTTCGCAATCTTAACGGATACGGGTTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGAATGGGTAAGTACCCTTGGTCGCT
TAAACAACGTATTCTTAGTGATACGGGTCATCTATCTAACGAAGATGGGGCTTCAGCCTTAATGGCCTTTATGGGACAAC
AAACAAAGCGTGTTTTCCTAGGTCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCATCAATT
TTAGAACAACATGATTACGGTGTTGGCACGGATTTTGAAATTTTGGATACTGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.459

96.642

0.575