Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | K4O48_RS18370 | Genome accession | NZ_CP082271 |
| Coordinates | 3965218..3966252 (-) | Length | 344 a.a. |
| NCBI ID | WP_222909779.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. DNDY-54 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3960218..3971252
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K4O48_RS18350 | - | 3961400..3961798 (-) | 399 | WP_222909776.1 | NINE protein | - |
| K4O48_RS18355 | - | 3961937..3963154 (+) | 1218 | WP_222909777.1 | putative DNA modification/repair radical SAM protein | - |
| K4O48_RS18360 | - | 3963154..3963993 (+) | 840 | WP_222909778.1 | TIGR03915 family putative DNA repair protein | - |
| K4O48_RS18365 | pilU | 3963994..3965139 (-) | 1146 | WP_045164002.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| K4O48_RS18370 | pilT | 3965218..3966252 (-) | 1035 | WP_222909779.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| K4O48_RS18375 | - | 3966319..3967032 (+) | 714 | WP_222909780.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| K4O48_RS18380 | proC | 3967045..3967872 (+) | 828 | WP_222909781.1 | pyrroline-5-carboxylate reductase | - |
| K4O48_RS18385 | - | 3968150..3968740 (+) | 591 | WP_222909782.1 | YggT family protein | - |
| K4O48_RS18390 | - | 3968862..3970823 (+) | 1962 | WP_222909783.1 | dynamin-like GTPase family protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 37919.65 Da Isoelectric Point: 6.8360
>NTDB_id=600707 K4O48_RS18370 WP_222909779.1 3965218..3966252(-) (pilT) [Pseudomonas sp. DNDY-54]
MDITELLAFSAKQGASDLHLSSGLPPMIRVDGDVRRINLPAMDHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGEVFRKITDVPRGLVLVTGPTGSGKSTTLAAMLDYLNSTKYHHILTIED
PIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKSMVRSMLSESLQAVISQTLLKKVGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSSIQTGGSLGMQTLDSCL
KGLLAKGLISRDSAKEKAKQPENF
MDITELLAFSAKQGASDLHLSSGLPPMIRVDGDVRRINLPAMDHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGEVFRKITDVPRGLVLVTGPTGSGKSTTLAAMLDYLNSTKYHHILTIED
PIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKSMVRSMLSESLQAVISQTLLKKVGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSSIQTGGSLGMQTLDSCL
KGLLAKGLISRDSAKEKAKQPENF
Nucleotide
Download Length: 1035 bp
>NTDB_id=600707 K4O48_RS18370 WP_222909779.1 3965218..3966252(-) (pilT) [Pseudomonas sp. DNDY-54]
ATGGATATCACAGAGCTGCTGGCCTTCAGTGCCAAGCAGGGTGCATCGGATTTGCACCTGTCTTCCGGCTTGCCGCCGAT
GATCCGCGTCGATGGCGATGTACGCCGGATCAACCTCCCCGCGATGGACCACAAGCAGGTGCACGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGTAAGGATTTCGAGGAATTTCTCGAGACCGACTTCTCGTTCGAAGTTCCCGGTGTCGCGCGT
TTCCGGGTCAACGCGTTCAACCAGAACCGCGGCGCTGGCGCGGTGTTCCGGACCATTCCGTCGAAGGTCCTGACCATGGA
AGACCTCGGGATGGGGGAGGTCTTCCGCAAGATCACCGATGTGCCGCGCGGCCTGGTGCTGGTGACCGGTCCAACCGGCT
CGGGCAAGTCGACTACCCTGGCGGCCATGCTCGACTACCTCAACAGCACCAAGTATCACCACATTCTCACCATCGAAGAC
CCGATCGAATTCGTCCATGAATCGAAAAAGTGTCTGGTCAACCAACGCGAAGTGCACCGTGACACGCTCGGCTTCTCTGA
GGCCTTGCGCTCGGCTCTGCGGGAAGACCCGGACATCATCCTCGTCGGCGAAATGCGTGACCTGGAGACCATCCGTTTGG
CGCTGACTGCTGCAGAAACAGGCCATCTGGTGTTTGGCACCCTGCACACCACCTCGGCGGCCAAGACCATCGACCGCGTG
GTTGACGTATTCCCGGCGGAAGAAAAATCCATGGTCCGCTCGATGCTTTCCGAGTCGCTGCAGGCGGTGATTTCCCAGAC
GTTGCTCAAGAAGGTCGGCGGTGGCCGCGTTGCGGCACACGAGATCATGATTGGCACGCCGGCGATCCGGAACCTGATTC
GTGAAGACAAAGTCGCGCAGATGTACTCGTCGATCCAGACCGGTGGTTCGTTAGGCATGCAAACGCTCGATTCCTGCCTG
AAAGGCCTGCTTGCCAAGGGCCTGATTTCACGCGATAGCGCAAAAGAAAAAGCCAAACAGCCAGAAAACTTCTAA
ATGGATATCACAGAGCTGCTGGCCTTCAGTGCCAAGCAGGGTGCATCGGATTTGCACCTGTCTTCCGGCTTGCCGCCGAT
GATCCGCGTCGATGGCGATGTACGCCGGATCAACCTCCCCGCGATGGACCACAAGCAGGTGCACGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGTAAGGATTTCGAGGAATTTCTCGAGACCGACTTCTCGTTCGAAGTTCCCGGTGTCGCGCGT
TTCCGGGTCAACGCGTTCAACCAGAACCGCGGCGCTGGCGCGGTGTTCCGGACCATTCCGTCGAAGGTCCTGACCATGGA
AGACCTCGGGATGGGGGAGGTCTTCCGCAAGATCACCGATGTGCCGCGCGGCCTGGTGCTGGTGACCGGTCCAACCGGCT
CGGGCAAGTCGACTACCCTGGCGGCCATGCTCGACTACCTCAACAGCACCAAGTATCACCACATTCTCACCATCGAAGAC
CCGATCGAATTCGTCCATGAATCGAAAAAGTGTCTGGTCAACCAACGCGAAGTGCACCGTGACACGCTCGGCTTCTCTGA
GGCCTTGCGCTCGGCTCTGCGGGAAGACCCGGACATCATCCTCGTCGGCGAAATGCGTGACCTGGAGACCATCCGTTTGG
CGCTGACTGCTGCAGAAACAGGCCATCTGGTGTTTGGCACCCTGCACACCACCTCGGCGGCCAAGACCATCGACCGCGTG
GTTGACGTATTCCCGGCGGAAGAAAAATCCATGGTCCGCTCGATGCTTTCCGAGTCGCTGCAGGCGGTGATTTCCCAGAC
GTTGCTCAAGAAGGTCGGCGGTGGCCGCGTTGCGGCACACGAGATCATGATTGGCACGCCGGCGATCCGGAACCTGATTC
GTGAAGACAAAGTCGCGCAGATGTACTCGTCGATCCAGACCGGTGGTTCGTTAGGCATGCAAACGCTCGATTCCTGCCTG
AAAGGCCTGCTTGCCAAGGGCCTGATTTCACGCGATAGCGCAAAAGAAAAAGCCAAACAGCCAGAAAACTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
99.709 |
100 |
0.997 |
| pilT | Pseudomonas aeruginosa PAK |
93.895 |
100 |
0.939 |
| pilT | Acinetobacter baumannii D1279779 |
84.012 |
100 |
0.84 |
| pilT | Acinetobacter baumannii strain A118 |
84.012 |
100 |
0.84 |
| pilT | Acinetobacter nosocomialis M2 |
83.721 |
100 |
0.837 |
| pilT | Acinetobacter baylyi ADP1 |
83.14 |
100 |
0.831 |
| pilT | Legionella pneumophila strain Lp02 |
74.556 |
98.256 |
0.733 |
| pilT | Legionella pneumophila strain ERS1305867 |
74.556 |
98.256 |
0.733 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
68.843 |
97.965 |
0.674 |
| pilT | Vibrio cholerae strain A1552 |
68.843 |
97.965 |
0.674 |
| pilT | Neisseria meningitidis 8013 |
67.246 |
100 |
0.674 |
| pilT | Neisseria gonorrhoeae MS11 |
66.957 |
100 |
0.672 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
52.464 |
100 |
0.526 |
| pilU | Vibrio cholerae strain A1552 |
41.003 |
98.547 |
0.404 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.896 |
97.384 |
0.398 |
| pilU | Acinetobacter baylyi ADP1 |
39.017 |
100 |
0.392 |