Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   M2I98_RS29405 Genome accession   NZ_CP096958
Coordinates   6267929..6268453 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain NY11210     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6262929..6273453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I98_RS29390 (M2I98_29335) aroB 6264045..6265151 (-) 1107 WP_028681386.1 3-dehydroquinate synthase -
  M2I98_RS29395 (M2I98_29340) aroK 6265201..6265719 (-) 519 WP_003095833.1 shikimate kinase AroK -
  M2I98_RS29400 (M2I98_29345) pilQ 6265731..6267875 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  M2I98_RS29405 (M2I98_29350) comL/pilP 6267929..6268453 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  M2I98_RS29410 (M2I98_29355) pilO 6268450..6269073 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  M2I98_RS29415 (M2I98_29360) pilN 6269070..6269666 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  M2I98_RS29420 (M2I98_29365) pilM 6269666..6270730 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  M2I98_RS29425 (M2I98_29370) - 6270915..6273386 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=592838 M2I98_RS29405 WP_003095836.1 6267929..6268453(-) (comL/pilP) [Pseudomonas aeruginosa strain NY11210]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=592838 M2I98_RS29405 WP_003095836.1 6267929..6268453(-) (comL/pilP) [Pseudomonas aeruginosa strain NY11210]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362