Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   K0H61_RS05100 Genome accession   NZ_CP080413
Coordinates   1136414..1137451 (+) Length   345 a.a.
NCBI ID   WP_011621982.1    Uniprot ID   -
Organism   Shewanella acanthi strain FJAT-51860     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1131414..1142451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H61_RS05070 (K0H61_05070) rdgB 1132502..1133119 (-) 618 WP_220051653.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  K0H61_RS05075 (K0H61_05075) - 1133232..1133666 (-) 435 WP_220051654.1 DUF4426 domain-containing protein -
  K0H61_RS05080 (K0H61_05080) yggU 1133751..1134041 (-) 291 WP_220051655.1 DUF167 family protein YggU -
  K0H61_RS05085 (K0H61_05085) - 1134041..1134589 (-) 549 WP_220051656.1 YggT family protein -
  K0H61_RS05090 (K0H61_05090) proC 1134630..1135448 (-) 819 WP_220051657.1 pyrroline-5-carboxylate reductase -
  K0H61_RS05095 (K0H61_05095) - 1135668..1136378 (-) 711 WP_220051658.1 YggS family pyridoxal phosphate-dependent enzyme -
  K0H61_RS05100 (K0H61_05100) pilT 1136414..1137451 (+) 1038 WP_011621982.1 type IV pilus twitching motility protein PilT Machinery gene
  K0H61_RS05105 (K0H61_05105) pilU 1137461..1138573 (+) 1113 WP_220051659.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  K0H61_RS05110 (K0H61_05110) - 1138707..1139273 (+) 567 WP_220051660.1 glutathione peroxidase -
  K0H61_RS05115 (K0H61_05115) hemH 1139311..1140324 (+) 1014 WP_220051661.1 ferrochelatase -
  K0H61_RS05120 (K0H61_05120) ruvX 1140397..1140822 (-) 426 WP_220051662.1 Holliday junction resolvase RuvX -
  K0H61_RS05125 (K0H61_05125) - 1140849..1141412 (-) 564 WP_220051663.1 YqgE/AlgH family protein -
  K0H61_RS05130 (K0H61_05130) yciH 1141491..1141820 (-) 330 WP_220051664.1 stress response translation initiation inhibitor YciH -
  K0H61_RS05135 (K0H61_05135) - 1141971..1142282 (-) 312 WP_220051665.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38340.02 Da        Isoelectric Point: 6.9097

>NTDB_id=592646 K0H61_RS05100 WP_011621982.1 1136414..1137451(+) (pilT) [Shewanella acanthi strain FJAT-51860]
MEITELLAFSVKHKASDLHLSAGISPMIRVDGEVRKINLPALDHQGVHSLVYDIMNDKQRKDFEEHLEIDFSFEVPNLAR
FRVNAFNQSRGAAAVFRTIPSEILSLEQLGAPEIFKKISSFPRGLVLVTGPTGSGKSTTLAAMVDYINENRHDHILTIED
PIEFVHQNKQCLINQREVHRHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAGEKDMVRTMLSESLQAVISQTLIKKIGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMAHGMQTLEQCL
QNLVNRGLITREDAMAKSSNKQATF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=592646 K0H61_RS05100 WP_011621982.1 1136414..1137451(+) (pilT) [Shewanella acanthi strain FJAT-51860]
ATGGAAATCACTGAGTTATTAGCTTTTAGTGTAAAGCACAAAGCGTCGGATCTACACCTCTCTGCTGGGATATCTCCCAT
GATCCGTGTCGACGGTGAAGTGAGAAAAATCAACCTGCCAGCGCTCGATCATCAGGGCGTACACAGCCTAGTGTACGACA
TTATGAATGATAAACAGCGCAAGGATTTTGAAGAACATTTAGAAATCGACTTCTCGTTTGAAGTCCCTAATCTTGCACGT
TTCCGTGTGAACGCATTTAACCAATCCCGCGGCGCCGCGGCGGTATTTCGTACCATTCCGAGTGAAATTTTATCACTCGA
GCAGTTAGGTGCGCCTGAGATTTTTAAGAAAATCTCCAGTTTCCCCCGTGGATTAGTATTAGTAACTGGGCCTACAGGTT
CGGGTAAGAGTACCACACTTGCGGCCATGGTGGATTACATCAATGAGAATCGCCACGACCATATCTTAACCATTGAAGAC
CCCATCGAATTCGTGCATCAAAACAAACAATGTTTGATTAACCAACGGGAAGTGCACCGTCATACCCATAGCTTCAACGC
GGCGCTGCGTAGCGCTCTGCGTGAAGACCCCGACGTAATTCTGGTGGGCGAGATGCGTGACCTTGAAACCATTCGTTTGG
CGATGACCGCGGCGGAAACGGGTCACTTAGTATTCGGTACTTTGCATACGACCTCTGCGGCTAAGACCATCGACCGTGTA
GTTGACGTATTCCCTGCTGGCGAAAAGGACATGGTGCGTACCATGTTATCTGAGTCATTACAGGCGGTTATTTCGCAAAC
CCTGATTAAGAAAATCGGAGGTGGCCGTGTGGCTGCCCACGAAATCATGATGGGTACTCCCGCCATTCGTAACCTTATAC
GTGAGGATAAAGTGGCGCAAATGTACTCAGCGATTCAAACCGGTATGGCCCATGGCATGCAAACGCTTGAACAATGTCTG
CAAAATCTGGTTAACCGTGGTCTCATCACCCGTGAAGACGCTATGGCGAAGAGTTCTAATAAACAAGCGACGTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

80.409

99.13

0.797
  pilT Acinetobacter baumannii strain A118

80.409

99.13

0.797
  pilT Acinetobacter nosocomialis M2

80.409

99.13

0.797
  pilT Pseudomonas aeruginosa PAK

79.586

97.971

0.78
  pilT Acinetobacter baylyi ADP1

77.843

99.42

0.774
  pilT Pseudomonas stutzeri DSM 10701

77.485

99.13

0.768
  pilT Legionella pneumophila strain Lp02

75.073

98.841

0.742
  pilT Legionella pneumophila strain ERS1305867

75.073

98.841

0.742
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

72.107

97.681

0.704
  pilT Vibrio cholerae strain A1552

72.107

97.681

0.704
  pilT Neisseria meningitidis 8013

69.477

99.71

0.693
  pilT Neisseria gonorrhoeae MS11

69.186

99.71

0.69
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.853

98.261

0.49
  pilU Pseudomonas stutzeri DSM 10701

41.983

99.42

0.417
  pilU Vibrio cholerae strain A1552

41.399

99.42

0.412
  pilU Acinetobacter baylyi ADP1

39.763

97.681

0.388