Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | KY495_RS04270 | Genome accession | NZ_CP080378 |
| Coordinates | 967831..968874 (+) | Length | 347 a.a. |
| NCBI ID | WP_219882514.1 | Uniprot ID | - |
| Organism | Massilia sp. PAMC28688 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 962831..973874
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KY495_RS04250 (KY495_04250) | - | 963689..964531 (+) | 843 | WP_219882511.1 | hypothetical protein | - |
| KY495_RS04255 (KY495_04255) | - | 964850..965875 (-) | 1026 | WP_219882512.1 | hypothetical protein | - |
| KY495_RS04260 (KY495_04260) | proC | 966208..967026 (-) | 819 | WP_219882513.1 | pyrroline-5-carboxylate reductase | - |
| KY495_RS04265 (KY495_04265) | - | 967041..967742 (-) | 702 | WP_219884084.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| KY495_RS04270 (KY495_04270) | pilT | 967831..968874 (+) | 1044 | WP_219882514.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| KY495_RS04275 (KY495_04275) | pilU | 968890..970026 (+) | 1137 | WP_219882515.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| KY495_RS04280 (KY495_04280) | - | 970026..970508 (+) | 483 | WP_219882516.1 | glutathione peroxidase | - |
| KY495_RS04285 (KY495_04285) | - | 970671..973646 (-) | 2976 | WP_219882517.1 | SIR2 family protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 37985.66 Da Isoelectric Point: 6.7264
>NTDB_id=592403 KY495_RS04270 WP_219882514.1 967831..968874(+) (pilT) [Massilia sp. PAMC28688]
MDISELLAFSVKNKASDLHLSSGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQRKAYEEMLEVDFSFAIPGLAR
FRVNAFNQERGAAAVLRTIPSKILSLEDLNAPKIFAELAMRPRGLVLVTGPTGSGKSTTLAAMVNHLNENEYGHILTIED
PIEFVHDSKKCLINQREVGPHTLSFNNALRSALREDPDCILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI
VDVFPADEKEMVRAMLSESLQAVISQTLLKTKDGGGRVAAHEIMIGTPAIRNLIREAKIAQMYSAIQTGSNVGMQTLDQN
LTDLVRRNVISSAAARNAAKIPDNFPG
MDISELLAFSVKNKASDLHLSSGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQRKAYEEMLEVDFSFAIPGLAR
FRVNAFNQERGAAAVLRTIPSKILSLEDLNAPKIFAELAMRPRGLVLVTGPTGSGKSTTLAAMVNHLNENEYGHILTIED
PIEFVHDSKKCLINQREVGPHTLSFNNALRSALREDPDCILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI
VDVFPADEKEMVRAMLSESLQAVISQTLLKTKDGGGRVAAHEIMIGTPAIRNLIREAKIAQMYSAIQTGSNVGMQTLDQN
LTDLVRRNVISSAAARNAAKIPDNFPG
Nucleotide
Download Length: 1044 bp
>NTDB_id=592403 KY495_RS04270 WP_219882514.1 967831..968874(+) (pilT) [Massilia sp. PAMC28688]
ATGGACATCTCCGAATTACTCGCATTCTCCGTCAAGAACAAGGCATCCGACCTGCACCTCTCATCCGGCCTGCCGCCGAT
GATCCGCGTGCACGGCGACGTGCGCCGCATCAACCTGCCGCCGCTCGAGCACAAGGACGTGCACGGCATGATCTATGACA
TCATGAACGACGGCCAGCGCAAGGCGTACGAAGAAATGCTGGAGGTGGACTTTTCGTTCGCCATTCCCGGCCTGGCGCGC
TTTCGCGTCAATGCCTTTAACCAGGAGCGTGGCGCCGCTGCCGTGCTGCGTACCATTCCTTCCAAGATCCTGAGTCTGGA
AGACCTGAACGCGCCCAAGATTTTTGCGGAACTGGCGATGCGTCCGCGCGGCCTGGTGCTGGTGACCGGCCCGACCGGCT
CCGGCAAGTCGACCACCTTGGCGGCCATGGTAAACCACCTGAACGAAAACGAGTATGGCCATATCCTGACCATTGAAGAC
CCGATCGAATTCGTGCACGACTCCAAGAAATGCCTGATCAACCAGCGCGAAGTGGGGCCGCACACGCTGTCGTTCAACAA
TGCGCTGCGCTCGGCGCTGCGCGAAGATCCGGACTGCATCCTGGTGGGCGAATTGCGCGACCTGGAAACCATCCGCCTGG
CCCTGTCGGCCGCCGAAACGGGTCACCTGGTGTTCGGCACGCTGCACACCTCGTCGGCCGCCAAGACCATCGACCGTATC
GTCGACGTGTTCCCGGCCGATGAAAAGGAGATGGTGCGCGCGATGCTGTCCGAATCACTGCAGGCCGTCATTTCACAGAC
CCTGCTCAAGACCAAGGATGGCGGCGGGCGGGTGGCGGCGCACGAGATCATGATCGGCACCCCGGCAATCCGCAACCTGA
TTCGCGAAGCGAAGATCGCCCAGATGTATTCGGCCATCCAGACCGGCAGCAACGTGGGCATGCAGACGCTCGACCAGAAC
CTCACCGACCTGGTACGCCGCAACGTGATTTCTTCGGCTGCAGCACGCAATGCGGCGAAAATCCCAGACAACTTCCCAGG
CTAA
ATGGACATCTCCGAATTACTCGCATTCTCCGTCAAGAACAAGGCATCCGACCTGCACCTCTCATCCGGCCTGCCGCCGAT
GATCCGCGTGCACGGCGACGTGCGCCGCATCAACCTGCCGCCGCTCGAGCACAAGGACGTGCACGGCATGATCTATGACA
TCATGAACGACGGCCAGCGCAAGGCGTACGAAGAAATGCTGGAGGTGGACTTTTCGTTCGCCATTCCCGGCCTGGCGCGC
TTTCGCGTCAATGCCTTTAACCAGGAGCGTGGCGCCGCTGCCGTGCTGCGTACCATTCCTTCCAAGATCCTGAGTCTGGA
AGACCTGAACGCGCCCAAGATTTTTGCGGAACTGGCGATGCGTCCGCGCGGCCTGGTGCTGGTGACCGGCCCGACCGGCT
CCGGCAAGTCGACCACCTTGGCGGCCATGGTAAACCACCTGAACGAAAACGAGTATGGCCATATCCTGACCATTGAAGAC
CCGATCGAATTCGTGCACGACTCCAAGAAATGCCTGATCAACCAGCGCGAAGTGGGGCCGCACACGCTGTCGTTCAACAA
TGCGCTGCGCTCGGCGCTGCGCGAAGATCCGGACTGCATCCTGGTGGGCGAATTGCGCGACCTGGAAACCATCCGCCTGG
CCCTGTCGGCCGCCGAAACGGGTCACCTGGTGTTCGGCACGCTGCACACCTCGTCGGCCGCCAAGACCATCGACCGTATC
GTCGACGTGTTCCCGGCCGATGAAAAGGAGATGGTGCGCGCGATGCTGTCCGAATCACTGCAGGCCGTCATTTCACAGAC
CCTGCTCAAGACCAAGGATGGCGGCGGGCGGGTGGCGGCGCACGAGATCATGATCGGCACCCCGGCAATCCGCAACCTGA
TTCGCGAAGCGAAGATCGCCCAGATGTATTCGGCCATCCAGACCGGCAGCAACGTGGGCATGCAGACGCTCGACCAGAAC
CTCACCGACCTGGTACGCCGCAACGTGATTTCTTCGGCTGCAGCACGCAATGCGGCGAAAATCCCAGACAACTTCCCAGG
CTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
77.391 |
99.424 |
0.769 |
| pilT | Acinetobacter baumannii D1279779 |
77.391 |
99.424 |
0.769 |
| pilT | Acinetobacter baumannii strain A118 |
77.391 |
99.424 |
0.769 |
| pilT | Pseudomonas aeruginosa PAK |
76.522 |
99.424 |
0.761 |
| pilT | Pseudomonas stutzeri DSM 10701 |
75.652 |
99.424 |
0.752 |
| pilT | Legionella pneumophila strain Lp02 |
75.811 |
97.695 |
0.741 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.811 |
97.695 |
0.741 |
| pilT | Acinetobacter baylyi ADP1 |
73.913 |
99.424 |
0.735 |
| pilT | Neisseria gonorrhoeae MS11 |
70.882 |
97.983 |
0.695 |
| pilT | Neisseria meningitidis 8013 |
70.882 |
97.983 |
0.695 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
69.578 |
95.677 |
0.666 |
| pilT | Vibrio cholerae strain A1552 |
69.578 |
95.677 |
0.666 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.725 |
99.424 |
0.504 |
| pilU | Acinetobacter baylyi ADP1 |
42.775 |
99.712 |
0.427 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.791 |
96.542 |
0.403 |
| pilU | Vibrio cholerae strain A1552 |
40.708 |
97.695 |
0.398 |