Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   KW556_RS20275 Genome accession   NZ_CP079823
Coordinates   4332476..4333510 (-) Length   344 a.a.
NCBI ID   WP_005340354.1    Uniprot ID   -
Organism   Aeromonas veronii strain HD6454     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4327476..4338510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW556_RS20245 (KW556_20165) glnK 4328042..4328380 (-) 339 WP_005341406.1 P-II family nitrogen regulator -
  KW556_RS20250 (KW556_20170) arfB 4328582..4328998 (+) 417 WP_139430011.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  KW556_RS20255 (KW556_20175) - 4329045..4329536 (+) 492 WP_259584147.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  KW556_RS20260 (KW556_20180) - 4329897..4330322 (-) 426 WP_005340360.1 hypothetical protein -
  KW556_RS20265 (KW556_20185) yaaA 4330517..4331290 (-) 774 WP_064338818.1 peroxide stress protein YaaA -
  KW556_RS20270 (KW556_20190) pilU 4331338..4332447 (-) 1110 WP_005340356.1 type IVa pilus ATPase TapU Machinery gene
  KW556_RS20275 (KW556_20195) pilT 4332476..4333510 (-) 1035 WP_005340354.1 type IVa pilus ATPase TapT Machinery gene
  KW556_RS20280 (KW556_20200) - 4333550..4334251 (+) 702 WP_019445603.1 YggS family pyridoxal phosphate-dependent enzyme -
  KW556_RS20285 (KW556_20205) proC 4334393..4335217 (+) 825 WP_259584149.1 pyrroline-5-carboxylate reductase -
  KW556_RS20290 (KW556_20210) - 4335229..4335780 (+) 552 WP_005357946.1 YggT family protein -
  KW556_RS20295 (KW556_20215) yggU 4335780..4336082 (+) 303 WP_021230942.1 DUF167 family protein YggU -
  KW556_RS20300 (KW556_20220) - 4336126..4336545 (+) 420 WP_005340339.1 DUF4426 domain-containing protein -
  KW556_RS20305 (KW556_20225) - 4336648..4337844 (-) 1197 WP_259584150.1 NupC/NupG family nucleoside CNT transporter -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38273.03 Da        Isoelectric Point: 6.7440

>NTDB_id=589804 KW556_RS20275 WP_005340354.1 4332476..4333510(-) (pilT) [Aeromonas veronii strain HD6454]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEFPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGVVASLDAKAKAVDPNSI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=589804 KW556_RS20275 WP_005340354.1 4332476..4333510(-) (pilT) [Aeromonas veronii strain HD6454]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAGCATAAAGCCTCGGATCTACACCTCTCGGCCGGGGTTCCCCCGAT
GATCAGGGTTGATGGTGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAACACCGGGAAGTGCATGCCCTCATTTACGACA
TCATGAACGACCATCAGCGCAAGGAGCTGGAGGAGAACTTCGAGGTCGACTTCTCGTTCGAGGTGCCCAATCTGGCCCGT
TTCCGGGTCAACGCCTTCCAGCAGGCGCGCGGTTCGGGCGCGGTATTTCGTACCATCCCCAGCACTGTGCTGAGCCTCGA
GGATCTCGATGCGCCGGAGATCTTCCGCAAGATTGCCGAGTTCCCGCGGGGTCTGGTGTTGGTAACCGGCCCGACCGGTT
CGGGTAAGTCGACCACCCTGGCGGCCATGGTCAACTACATCAACGAGAACTTCCATCACCATATCCTCACCATCGAGGAC
CCTATCGAATTCGTCCACGAGAACAAGCGCTGTCTGGTGAACCAGCGGGAAGTGCACCGCGATACCAAGAGCTTCAGCAA
CGCCCTGCGCTCGGCACTGCGGGAAGACCCGGACATCATTCTGGTGGGAGAGATGCGCGACCTTGAGACCATTCGTTTGG
CCATGACCGCCGCCGAAACTGGCCATCTGGTGTTTGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGTATC
ATTGACGTCTTCCCCGGCGCGGAGAAGGACATGGTGCGCTCCATGCTCTCCGAATCCCTGCGGGCAGTTATCTCCCAGAC
CCTGCTCAAGCGCATTGGCGGTGGCCGAGTGGCGGCTCACGAGATCATGATGGGCATTCCGGCGGTGCGTAACTTGATCC
GGGAGGACAAGATTGCCCAGCTTTACTCGGTGATCCAGACCGGGATGACCCACGGTATGCAGACCATGGATCAGAGTCTC
AAGCAGTTGGTGAGTCGTGGTGTGGTGGCATCCCTCGATGCCAAGGCCAAGGCCGTCGATCCCAACAGCATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.326

100

0.773
  pilT Acinetobacter baylyi ADP1

77.551

99.709

0.773
  pilT Acinetobacter baumannii D1279779

77.035

100

0.77
  pilT Acinetobacter baumannii strain A118

77.035

100

0.77
  pilT Pseudomonas stutzeri DSM 10701

76.163

100

0.762
  pilT Pseudomonas aeruginosa PAK

75.291

100

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

75.964

97.965

0.744
  pilT Vibrio cholerae strain A1552

75.964

97.965

0.744
  pilT Legionella pneumophila strain Lp02

72.941

98.837

0.721
  pilT Legionella pneumophila strain ERS1305867

72.941

98.837

0.721
  pilT Neisseria meningitidis 8013

69.855

100

0.701
  pilT Neisseria gonorrhoeae MS11

69.565

100

0.698
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407