Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   I6L37_RS01345 Genome accession   NZ_CP077399
Coordinates   272588..273622 (-) Length   344 a.a.
NCBI ID   WP_026457847.1    Uniprot ID   A0AAU6TAH8
Organism   Aeromonas sp. FDAARGOS 1407     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 267588..278622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L37_RS01315 (I6L37_01315) glnK 268186..268524 (-) 339 WP_026456195.1 P-II family nitrogen regulator -
  I6L37_RS01320 (I6L37_01320) arfB 268726..269142 (+) 417 WP_026456194.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  I6L37_RS01325 (I6L37_01325) - 269173..269664 (+) 492 WP_216993088.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  I6L37_RS01330 (I6L37_01330) - 270019..270444 (-) 426 WP_042026650.1 hypothetical protein -
  I6L37_RS01335 (I6L37_01335) yaaA 270633..271406 (-) 774 WP_216993089.1 peroxide stress protein YaaA -
  I6L37_RS01340 (I6L37_01340) pilU 271450..272559 (-) 1110 WP_042026652.1 type IVa pilus ATPase TapU Machinery gene
  I6L37_RS01345 (I6L37_01345) pilT 272588..273622 (-) 1035 WP_026457847.1 type IVa pilus ATPase TapT Machinery gene
  I6L37_RS01350 (I6L37_01350) - 273662..274363 (+) 702 WP_216993090.1 YggS family pyridoxal phosphate-dependent enzyme -
  I6L37_RS01355 (I6L37_01355) proC 274420..275244 (+) 825 WP_216993091.1 pyrroline-5-carboxylate reductase -
  I6L37_RS01360 (I6L37_01360) - 275256..275807 (+) 552 WP_216993092.1 YggT family protein -
  I6L37_RS01365 (I6L37_01365) yggU 275807..276100 (+) 294 WP_042026655.1 DUF167 family protein YggU -
  I6L37_RS01370 (I6L37_01370) - 276137..276556 (+) 420 WP_026457681.1 DUF4426 domain-containing protein -
  I6L37_RS01375 (I6L37_01375) - 276662..277858 (-) 1197 WP_026457680.1 NupC/NupG family nucleoside CNT transporter -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38215.98 Da        Isoelectric Point: 6.7440

>NTDB_id=581211 I6L37_RS01345 WP_026457847.1 272588..273622(-) (pilT) [Aeromonas sp. FDAARGOS 1407]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEFPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSAALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGVVASLDAKAKAVDPNSV

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=581211 I6L37_RS01345 WP_026457847.1 272588..273622(-) (pilT) [Aeromonas sp. FDAARGOS 1407]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAGCATAAAGCCTCGGATCTACACCTGTCGGCCGGGGTTCCCCCGAT
GATCAGGGTTGACGGGGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAGCACAGGGAAGTTCACGCCCTCATCTATGACA
TCATGAACGACCACCAGCGCAAGGAGCTGGAGGAAAATTTCGAGGTCGACTTCTCGTTCGAGGTGCCCAATCTGGCGCGT
TTCCGGGTCAACGCCTTCCAGCAGGCGCGTGGATCCGGCGCCGTGTTTCGTACCATCCCCAGTACGGTACTGAGCCTTGA
GGATCTTGATGCCCCCGAGATATTTCGCAAGATTGCCGAATTCCCACGGGGTCTGGTGCTGGTGACGGGCCCGACCGGCT
CGGGCAAATCCACCACTCTGGCGGCCATGGTCAACTACATCAACGAGAACTTTCATCACCACATCCTCACCATCGAGGAT
CCCATCGAATTCGTGCACGAGAACAAGCGCTGTCTGGTCAACCAGCGGGAAGTGCACCGCGATACCAAGAGTTTCAGCGC
CGCCCTGCGTTCGGCCCTGCGTGAAGACCCGGACATCATTCTGGTGGGCGAGATGCGGGACCTCGAGACCATCCGACTCG
CCATGACCGCGGCCGAGACCGGTCACCTGGTGTTCGGCACCTTGCACACCTCGTCGGCGGCCAAGACTATAGACCGTATC
ATCGACGTCTTCCCCGGCGCGGAGAAGGACATGGTGCGCTCCATGCTGTCCGAATCCTTGCGGGCTGTCATTTCCCAGAC
CCTGCTCAAGCGGATCGGCGGCGGCCGGGTGGCGGCCCACGAGATCATGATGGGCATTCCGGCGGTGCGAAACCTCATTC
GGGAAGACAAGATCGCTCAGCTCTACTCGGTGATCCAGACCGGGATGACCCACGGCATGCAGACCATGGATCAGAGCCTC
AAACAGCTGGTCAGCCGGGGTGTGGTGGCGTCCCTCGATGCCAAGGCCAAGGCCGTCGATCCCAACAGCGTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.551

99.709

0.773
  pilT Acinetobacter baylyi ADP1

77.551

99.709

0.773
  pilT Acinetobacter baumannii D1279779

77.259

99.709

0.77
  pilT Acinetobacter baumannii strain A118

77.259

99.709

0.77
  pilT Pseudomonas stutzeri DSM 10701

76.385

99.709

0.762
  pilT Pseudomonas aeruginosa PAK

75.51

99.709

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

75.668

97.965

0.741
  pilT Vibrio cholerae strain A1552

75.668

97.965

0.741
  pilT Legionella pneumophila strain Lp02

73.235

98.837

0.724
  pilT Legionella pneumophila strain ERS1305867

73.235

98.837

0.724
  pilT Neisseria meningitidis 8013

69.565

100

0.698
  pilT Neisseria gonorrhoeae MS11

69.275

100

0.695
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407