Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   I6L37_RS01340 Genome accession   NZ_CP077399
Coordinates   271450..272559 (-) Length   369 a.a.
NCBI ID   WP_042026652.1    Uniprot ID   A0AAU6TAV3
Organism   Aeromonas sp. FDAARGOS 1407     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 266450..277559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L37_RS01305 (I6L37_01305) - 266888..267415 (-) 528 WP_042026648.1 hypothetical protein -
  I6L37_RS01310 (I6L37_01310) - 267575..268045 (+) 471 WP_026456196.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6L37_RS01315 (I6L37_01315) glnK 268186..268524 (-) 339 WP_026456195.1 P-II family nitrogen regulator -
  I6L37_RS01320 (I6L37_01320) arfB 268726..269142 (+) 417 WP_026456194.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  I6L37_RS01325 (I6L37_01325) - 269173..269664 (+) 492 WP_216993088.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  I6L37_RS01330 (I6L37_01330) - 270019..270444 (-) 426 WP_042026650.1 hypothetical protein -
  I6L37_RS01335 (I6L37_01335) yaaA 270633..271406 (-) 774 WP_216993089.1 peroxide stress protein YaaA -
  I6L37_RS01340 (I6L37_01340) pilU 271450..272559 (-) 1110 WP_042026652.1 type IVa pilus ATPase TapU Machinery gene
  I6L37_RS01345 (I6L37_01345) pilT 272588..273622 (-) 1035 WP_026457847.1 type IVa pilus ATPase TapT Machinery gene
  I6L37_RS01350 (I6L37_01350) - 273662..274363 (+) 702 WP_216993090.1 YggS family pyridoxal phosphate-dependent enzyme -
  I6L37_RS01355 (I6L37_01355) proC 274420..275244 (+) 825 WP_216993091.1 pyrroline-5-carboxylate reductase -
  I6L37_RS01360 (I6L37_01360) - 275256..275807 (+) 552 WP_216993092.1 YggT family protein -
  I6L37_RS01365 (I6L37_01365) yggU 275807..276100 (+) 294 WP_042026655.1 DUF167 family protein YggU -
  I6L37_RS01370 (I6L37_01370) - 276137..276556 (+) 420 WP_026457681.1 DUF4426 domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41169.16 Da        Isoelectric Point: 6.2710

>NTDB_id=581210 I6L37_RS01340 WP_042026652.1 271450..272559(-) (pilU) [Aeromonas sp. FDAARGOS 1407]
MNLDQMLAELVSRKGSDLFVTVGSPPTLKVNGHLVALGNEPLDKKEALTLVRETLSSDHFERYIRTKEANYAIHREELGR
FRVSAFWQQELPGMVLRRIETRIPTFDDLSLPPILQDVAMAKRGLVLFVGATGAGKSTTQAAMIGYRNQHADGHILTVED
PVEFVHQHGRSLVTQREVGIDTESFDVALKSSLRQAPDVILIGEIRSQETMEFALQFAETGHLCLATLHANNANQALDRI
LHLVPQEKHRQFLFDLSFNLRGIVAQQLVPSIDGRRRFAAFEILLNTPLITDIIRKGEMHRLKEVMTKSSELGMQTFDQA
LFALFCAGQIGYSEALAHADSANDLRLLIKLSGHEQLGSGMLDNVTLDE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=581210 I6L37_RS01340 WP_042026652.1 271450..272559(-) (pilU) [Aeromonas sp. FDAARGOS 1407]
ATGAATCTGGATCAGATGCTGGCCGAGCTGGTCAGCCGCAAGGGCTCGGATCTGTTTGTGACGGTGGGCTCGCCTCCCAC
CCTCAAGGTCAATGGTCACCTGGTGGCGCTGGGCAACGAGCCCCTCGACAAGAAGGAGGCGCTGACCCTGGTCAGGGAGA
CCCTCAGCTCGGACCATTTTGAACGCTACATCCGAACCAAGGAGGCCAACTACGCCATCCATCGTGAGGAGCTGGGCCGT
TTTCGGGTCAGTGCCTTCTGGCAGCAAGAGCTGCCTGGCATGGTGCTGCGCCGCATCGAGACTCGCATTCCCACCTTCGA
TGATCTGAGCCTGCCTCCCATATTGCAGGACGTGGCGATGGCCAAGCGGGGACTGGTGTTGTTCGTCGGGGCCACGGGGG
CGGGCAAGTCCACCACCCAGGCGGCCATGATCGGCTATCGCAACCAGCATGCGGATGGGCACATACTGACGGTGGAAGAT
CCGGTGGAGTTCGTGCACCAACACGGCCGCAGCCTGGTGACCCAGCGCGAGGTGGGGATAGACACCGAATCGTTCGACGT
GGCGCTGAAGAGCTCTCTGCGCCAGGCGCCGGATGTGATCCTGATCGGAGAAATCCGCAGCCAGGAGACCATGGAGTTTG
CCCTGCAGTTTGCCGAGACTGGTCACCTCTGTCTGGCAACTCTGCATGCCAACAACGCCAACCAGGCGCTGGATCGCATC
CTGCATCTGGTCCCCCAGGAGAAACACCGCCAGTTTCTGTTCGATCTCTCGTTCAACCTGCGTGGCATCGTTGCCCAGCA
ACTGGTGCCCAGTATCGACGGGCGGCGACGTTTTGCCGCCTTCGAGATCCTGCTCAACACCCCGCTCATCACCGACATCA
TCCGCAAGGGAGAGATGCACCGGCTCAAGGAAGTGATGACCAAATCCTCAGAGCTTGGCATGCAGACCTTCGATCAGGCG
CTGTTTGCCCTGTTCTGTGCCGGCCAGATTGGCTACAGTGAGGCCCTCGCCCATGCCGACTCGGCCAATGACCTGCGACT
GCTGATCAAGCTTTCGGGTCATGAACAGCTGGGATCCGGCATGCTGGACAATGTGACGCTAGACGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(118-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

60.598

99.729

0.604
  pilU Pseudomonas stutzeri DSM 10701

58.689

95.122

0.558
  pilU Acinetobacter baylyi ADP1

56.091

95.664

0.537
  pilT Legionella pneumophila strain Lp02

40.525

92.954

0.377
  pilT Legionella pneumophila strain ERS1305867

40.525

92.954

0.377
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.994

89.702

0.377