Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   I6L35_RS08980 Genome accession   NZ_CP077311
Coordinates   1902415..1903449 (+) Length   344 a.a.
NCBI ID   WP_005340354.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1405     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1897415..1908449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L35_RS08950 (I6L35_08950) - 1898081..1899277 (+) 1197 WP_005357935.1 NupC/NupG family nucleoside CNT transporter -
  I6L35_RS08955 (I6L35_08955) - 1899379..1899798 (-) 420 WP_113740088.1 DUF4426 domain-containing protein -
  I6L35_RS08960 (I6L35_08960) yggU 1899842..1900144 (-) 303 WP_021230942.1 DUF167 family protein YggU -
  I6L35_RS08965 (I6L35_08965) - 1900144..1900695 (-) 552 WP_124930250.1 YggT family protein -
  I6L35_RS08970 (I6L35_08970) proC 1900707..1901531 (-) 825 WP_216980068.1 pyrroline-5-carboxylate reductase -
  I6L35_RS08975 (I6L35_08975) - 1901674..1902375 (-) 702 WP_216980069.1 YggS family pyridoxal phosphate-dependent enzyme -
  I6L35_RS08980 (I6L35_08980) pilT 1902415..1903449 (+) 1035 WP_005340354.1 type IVa pilus ATPase TapT Machinery gene
  I6L35_RS08985 (I6L35_08985) pilU 1903478..1904587 (+) 1110 WP_005340356.1 type IVa pilus ATPase TapU Machinery gene
  I6L35_RS08990 (I6L35_08990) yaaA 1904635..1905408 (+) 774 WP_100646812.1 peroxide stress protein YaaA -
  I6L35_RS08995 (I6L35_08995) - 1905603..1906028 (+) 426 WP_005340360.1 hypothetical protein -
  I6L35_RS09000 (I6L35_09000) - 1906388..1906879 (-) 492 WP_216980070.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  I6L35_RS09005 (I6L35_09005) arfB 1906905..1907321 (-) 417 WP_216980071.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  I6L35_RS09010 (I6L35_09010) glnK 1907523..1907861 (+) 339 WP_005341406.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38273.03 Da        Isoelectric Point: 6.7440

>NTDB_id=580753 I6L35_RS08980 WP_005340354.1 1902415..1903449(+) (pilT) [Aeromonas sp. FDAARGOS 1405]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEFPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGVVASLDAKAKAVDPNSI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=580753 I6L35_RS08980 WP_005340354.1 1902415..1903449(+) (pilT) [Aeromonas sp. FDAARGOS 1405]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAGCATAAAGCCTCGGATCTACACCTCTCGGCCGGGGTTCCCCCGAT
GATCAGGGTTGATGGTGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAACACCGGGAAGTGCATGCGCTCATTTACGACA
TCATGAACGACCATCAGCGCAAGGAGCTGGAGGAGAACTTCGAGGTCGACTTCTCGTTCGAAGTGCCCAATTTGGCCCGT
TTCCGGGTCAACGCCTTCCAGCAGGCGCGCGGCTCGGGCGCGGTATTTCGTACCATCCCCAGCACGGTGCTGAGCCTCGA
GGATCTCGATGCGCCGGAGATCTTCCGCAAGATCGCCGAGTTTCCGCGGGGTCTGGTGTTGGTGACCGGCCCGACCGGTT
CCGGTAAGTCGACCACGCTGGCGGCCATGGTCAACTACATCAACGAGAACTTCCATCACCACATCCTCACCATCGAAGAC
CCCATCGAATTCGTCCACGAGAACAAGCGCTGTCTGGTGAACCAGCGGGAAGTGCACCGGGATACCAAGAGCTTCAGCAA
CGCCCTGCGCTCGGCACTGCGGGAAGACCCGGACATCATTCTGGTGGGCGAGATGCGCGACCTTGAGACCATTCGTTTGG
CCATGACCGCCGCCGAAACTGGCCATCTGGTGTTTGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGTATC
ATCGACGTCTTCCCCGGCGCGGAGAAGGACATGGTGCGCTCCATGCTCTCCGAATCCCTGCGGGCGGTTATCTCCCAGAC
CCTGCTCAAGCGTATCGGTGGCGGTCGGGTGGCGGCTCACGAGATCATGATGGGCATTCCGGCGGTGCGTAACCTGATCC
GCGAGGACAAGATTGCCCAGCTCTACTCGGTGATCCAGACCGGGATGACCCACGGCATGCAGACCATGGATCAGAGCCTC
AAGCAGCTGGTTAGTCGTGGCGTGGTGGCATCCCTTGATGCCAAGGCCAAGGCCGTGGATCCCAACAGCATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.326

100

0.773
  pilT Acinetobacter baylyi ADP1

77.551

99.709

0.773
  pilT Acinetobacter baumannii D1279779

77.035

100

0.77
  pilT Acinetobacter baumannii strain A118

77.035

100

0.77
  pilT Pseudomonas stutzeri DSM 10701

76.163

100

0.762
  pilT Pseudomonas aeruginosa PAK

75.291

100

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

75.964

97.965

0.744
  pilT Vibrio cholerae strain A1552

75.964

97.965

0.744
  pilT Legionella pneumophila strain Lp02

72.941

98.837

0.721
  pilT Legionella pneumophila strain ERS1305867

72.941

98.837

0.721
  pilT Neisseria meningitidis 8013

69.855

100

0.701
  pilT Neisseria gonorrhoeae MS11

69.565

100

0.698
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407