Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   KR767_RS12890 Genome accession   NZ_CP077072
Coordinates   2963638..2964675 (+) Length   345 a.a.
NCBI ID   WP_166949786.1    Uniprot ID   A0A7X5ZJF0
Organism   Luteibacter anthropi strain SM7.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2958638..2969675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KR767_RS12875 (KR767_12865) - 2959721..2961841 (+) 2121 WP_166949780.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  KR767_RS12880 (KR767_12870) - 2962126..2962701 (-) 576 WP_166949782.1 YggT family protein -
  KR767_RS12885 (KR767_12875) proC 2962698..2963522 (-) 825 WP_250876575.1 pyrroline-5-carboxylate reductase -
  KR767_RS12890 (KR767_12880) pilT 2963638..2964675 (+) 1038 WP_166949786.1 type IV pilus twitching motility protein PilT Machinery gene
  KR767_RS12895 (KR767_12885) pilU 2964716..2965879 (+) 1164 WP_166949788.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  KR767_RS12900 (KR767_12890) - 2966098..2966463 (-) 366 WP_166949790.1 BON domain-containing protein -
  KR767_RS12905 (KR767_12895) - 2966766..2968517 (-) 1752 WP_345779876.1 hypothetical protein -
  KR767_RS12910 (KR767_12900) - 2968651..2969577 (-) 927 WP_250876576.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38457.17 Da        Isoelectric Point: 6.7837

>NTDB_id=578625 KR767_RS12890 WP_166949786.1 2963638..2964675(+) (pilT) [Luteibacter anthropi strain SM7.4]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALEHKQVHALIYDIMSDKQRRDYEEFLEVDFSFEIPGLAR
FRVNAFNHNRGAGGVFRTIPSEVLTLEDLGAPRIFRELIEQPQGLILVTGPTGSGKSTTLAAMVDHINKTEYGHLLTVED
PIEFVHTSQKCLVNQREVHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQSLLKKVGGGRLAAHEIMVGIPAIRNLIREDKVAQMYSAIQTGQQYGMQTLDQNL
LDLVKRGLITRQEGAMYAKNKEAFR

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=578625 KR767_RS12890 WP_166949786.1 2963638..2964675(+) (pilT) [Luteibacter anthropi strain SM7.4]
ATGGACATCGCCGAACTCCTTGCCTTCTCCGTGAAGAACAAGGCCTCCGACCTGCACCTTTCTGCCGGTCTCCCGCCGAT
GATCCGCGTGGACGGCGACGTGCGCCGCATCAACATCCCCGCGCTGGAGCACAAGCAGGTCCACGCGCTGATCTACGACA
TCATGTCGGACAAGCAGCGGCGTGACTATGAGGAATTCCTTGAGGTCGATTTCTCGTTCGAAATCCCAGGCCTGGCCCGC
TTCCGCGTCAACGCCTTCAACCACAACCGTGGTGCCGGCGGCGTGTTTCGTACCATTCCGTCCGAAGTGCTCACCCTGGA
AGACCTGGGCGCACCGCGCATCTTCCGCGAGCTGATCGAGCAGCCCCAGGGCCTGATCCTGGTCACCGGGCCCACGGGCT
CGGGCAAGTCGACCACCCTGGCGGCCATGGTCGATCACATCAACAAGACCGAATACGGCCACCTCCTCACCGTGGAGGAC
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTCGTCAACCAGCGCGAAGTGCACCGGGACACCCACGGTTTCAACGA
GGCGCTGCGTTCCGCGCTGCGCGAAGATCCGGATTACATCCTTGTAGGCGAACTGCGCGACCTGGAAACCATCCGCCTGG
CGCTTACCGCCGCGGAAACGGGCCATCTGGTGTTCGGCACCCTGCATACCTCGTCGGCCGCCAAGACCATCGACCGTATC
ATCGACGTGTTTCCGGCGGGCGAGAAGCCCATGGTGCGCTCCATGCTTTCCGAGTCGCTGCGCGCGGTCATCTCGCAGTC
ACTGCTGAAGAAAGTGGGCGGCGGTCGCCTGGCGGCGCACGAGATCATGGTAGGCATCCCGGCCATCCGCAACCTCATTC
GCGAAGACAAGGTGGCGCAGATGTACTCCGCCATCCAGACCGGCCAGCAGTACGGCATGCAGACCCTCGACCAGAACCTG
CTGGACCTGGTGAAGCGCGGCCTCATCACACGCCAGGAAGGCGCGATGTACGCGAAAAACAAGGAAGCCTTCCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X5ZJF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.07

99.71

0.788
  pilT Acinetobacter baumannii D1279779

79.07

99.71

0.788
  pilT Acinetobacter baumannii strain A118

79.07

99.71

0.788
  pilT Pseudomonas stutzeri DSM 10701

78.488

99.71

0.783
  pilT Pseudomonas aeruginosa PAK

78.198

99.71

0.78
  pilT Acinetobacter baylyi ADP1

77.326

99.71

0.771
  pilT Legionella pneumophila strain Lp02

73.837

99.71

0.736
  pilT Legionella pneumophila strain ERS1305867

73.837

99.71

0.736
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.171

96.522

0.687
  pilT Vibrio cholerae strain A1552

71.171

96.522

0.687
  pilT Neisseria meningitidis 8013

64.928

100

0.649
  pilT Neisseria gonorrhoeae MS11

64.638

100

0.646
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.275

100

0.493
  pilU Vibrio cholerae strain A1552

39.306

100

0.394
  pilU Pseudomonas stutzeri DSM 10701

39.017

100

0.391
  pilU Acinetobacter baylyi ADP1

38.329

100

0.386