Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | HPPMSS1_RS05180 | Genome accession | NZ_AP017633 |
| Coordinates | 1100845..1102020 (+) | Length | 391 a.a. |
| NCBI ID | WP_077231869.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PMSS1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1095845..1107020
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPMSS1_RS05155 (HPATCC43504_RS05360) | - | 1096088..1096984 (+) | 897 | WP_000697557.1 | OriC activity response regulator | - |
| HPPMSS1_RS05160 (HPATCC43504_RS05370) | - | 1097240..1098076 (+) | 837 | WP_000556228.1 | 5'-3' exonuclease | - |
| HPPMSS1_RS05165 (HPATCC43504_RS05375) | - | 1098183..1099433 (-) | 1251 | WP_077231871.1 | hypothetical protein | - |
| HPPMSS1_RS05170 (HPATCC43504_RS05380) | - | 1099601..1100467 (+) | 867 | WP_077231870.1 | DnaJ C-terminal domain-containing protein | - |
| HPPMSS1_RS05175 (HPATCC43504_RS05385) | - | 1100477..1100848 (+) | 372 | WP_000332994.1 | helix-turn-helix transcriptional regulator | - |
| HPPMSS1_RS05180 (HPATCC43504_RS05390) | rarA | 1100845..1102020 (+) | 1176 | WP_077231869.1 | replication-associated recombination protein A | Machinery gene |
| HPPMSS1_RS05185 (HPATCC43504_RS05395) | fur | 1102180..1102632 (+) | 453 | WP_077808635.1 | ferric iron uptake transcriptional regulator | - |
| HPPMSS1_RS05190 (HPATCC43504_RS05400) | - | 1102652..1103149 (-) | 498 | WP_077231867.1 | DUF2147 domain-containing protein | - |
| HPPMSS1_RS05195 (HPATCC43504_RS05405) | - | 1103146..1103682 (-) | 537 | WP_077231866.1 | YhcH/YjgK/YiaL family protein | - |
| HPPMSS1_RS05200 (HPATCC43504_RS05410) | fliY | 1103712..1104569 (-) | 858 | WP_077231865.1 | flagellar motor switch protein FliY | - |
| HPPMSS1_RS05205 (HPATCC43504_RS05415) | fliM | 1104573..1105637 (-) | 1065 | WP_001962641.1 | flagellar motor switch protein FliM | - |
| HPPMSS1_RS05210 (HPATCC43504_RS05420) | - | 1105630..1106397 (-) | 768 | WP_077231864.1 | RNA polymerase sigma factor FliA | - |
| HPPMSS1_RS05215 (HPATCC43504_RS05425) | - | 1106375..1106689 (-) | 315 | WP_001265941.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43811.51 Da Isoelectric Point: 8.5299
>NTDB_id=57441 HPPMSS1_RS05180 WP_077231869.1 1100845..1102020(+) (rarA) [Helicobacter pylori strain PMSS1]
MSLTALLNPKSLEDFLGQEHLIGKNAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAHMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
MSLTALLNPKSLEDFLGQEHLIGKNAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAHMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=57441 HPPMSS1_RS05180 WP_077231869.1 1100845..1102020(+) (rarA) [Helicobacter pylori strain PMSS1]
ATGAGCCTGACTGCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAAACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCACATGCTAGAGCGCCCCATTCTTTTGTTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTACCTTTTAAACAACAGCGCCGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTACAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGCTCATTAAATCTTTAAGAGGGAGCGAT
GAAAACGCCTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTAGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTGCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAAACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCACATGCTAGAGCGCCCCATTCTTTTGTTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTACCTTTTAAACAACAGCGCCGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTACAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGCTCATTAAATCTTTAAGAGGGAGCGAT
GAAAACGCCTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTAGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
36.65 |
100 |
0.386 |