Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HPPMSS1_RS05345 Genome accession   NZ_AP017633
Coordinates   1132951..1133961 (+) Length   336 a.a.
NCBI ID   WP_000664481.1    Uniprot ID   -
Organism   Helicobacter pylori strain PMSS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127951..1138961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPMSS1_RS05320 (HPATCC43504_RS05535) - 1128135..1129457 (-) 1323 WP_162272575.1 M23 family metallopeptidase -
  HPPMSS1_RS05325 (HPATCC43504_RS05540) - 1129467..1130411 (-) 945 WP_077231848.1 outer membrane beta-barrel protein -
  HPPMSS1_RS05330 (HPATCC43504_RS05545) - 1130420..1131277 (-) 858 WP_103153337.1 outer membrane beta-barrel protein -
  HPPMSS1_RS05335 (HPATCC43504_RS05550) - 1131267..1131989 (-) 723 WP_038417376.1 hypothetical protein -
  HPPMSS1_RS05340 (HPATCC43504_RS05555) panB 1132138..1132950 (+) 813 WP_077231846.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HPPMSS1_RS05345 (HPATCC43504_RS05560) ruvB 1132951..1133961 (+) 1011 WP_000664481.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HPPMSS1_RS05350 (HPATCC43504_RS05565) tatB 1134029..1134511 (+) 483 WP_077231845.1 Sec-independent protein translocase protein TatB -
  HPPMSS1_RS05355 (HPATCC43504_RS05570) tatC 1134504..1135223 (+) 720 WP_077231844.1 twin-arginine translocase subunit TatC -
  HPPMSS1_RS05360 (HPATCC43504_RS05575) queA 1135224..1136261 (+) 1038 WP_077231843.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HPPMSS1_RS05365 (HPATCC43504_RS05580) rsmG 1136258..1136794 (+) 537 WP_077231842.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HPPMSS1_RS05370 (HPATCC43504_RS05585) - 1136788..1137030 (+) 243 WP_162272574.1 PP0621 family protein -
  HPPMSS1_RS05375 (HPATCC43504_RS05590) - 1137033..1137440 (+) 408 WP_077231840.1 hypothetical protein -
  HPPMSS1_RS05385 (HPATCC43504_RS05600) - 1137572..1138144 (-) 573 WP_227986160.1 outer membrane protein -
  HPPMSS1_RS05390 (HPATCC43504_RS05605) - 1138465..1138839 (+) 375 WP_000772151.1 chemotaxis response regulator CheY -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37297.31 Da        Isoelectric Point: 6.3684

>NTDB_id=57442 HPPMSS1_RS05345 WP_000664481.1 1132951..1133961(+) (ruvB) [Helicobacter pylori strain PMSS1]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=57442 HPPMSS1_RS05345 WP_000664481.1 1132951..1133961(+) (ruvB) [Helicobacter pylori strain PMSS1]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACC
AGAGCTGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCACTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAACTAGGTGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.619

100

0.976
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.56

96.131

0.515
  ruvB Streptococcus pneumoniae TIGR4

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae R6

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae D39

50.464

96.131

0.485
  ruvB Synechocystis sp. PCC 6803

52.475

90.179

0.473

Multiple sequence alignment