Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | KFB96_RS14450 | Genome accession | NZ_CP073760 |
| Coordinates | 3179383..3180420 (-) | Length | 345 a.a. |
| NCBI ID | WP_213457780.1 | Uniprot ID | - |
| Organism | MAG: Thiocapsa sp. isolate M50B4 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3179169..3222054 | 3179383..3180420 | within | 0 |
Gene organization within MGE regions
Location: 3179169..3222054
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFB96_RS14450 (KFB96_14450) | pilT | 3179383..3180420 (-) | 1038 | WP_213457780.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| KFB96_RS14455 (KFB96_14455) | - | 3180856..3181638 (+) | 783 | WP_213457779.1 | (Fe-S)-binding protein | - |
| KFB96_RS14460 (KFB96_14460) | - | 3181950..3182273 (+) | 324 | WP_213457778.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KFB96_RS14465 (KFB96_14465) | - | 3182270..3182599 (+) | 330 | WP_093036041.1 | addiction module antidote protein | - |
| KFB96_RS14470 (KFB96_14470) | - | 3183045..3184454 (+) | 1410 | WP_213457777.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| KFB96_RS14475 (KFB96_14475) | - | 3184451..3185095 (+) | 645 | WP_213457776.1 | LUD domain-containing protein | - |
| KFB96_RS14480 (KFB96_14480) | - | 3185206..3186105 (-) | 900 | WP_213457775.1 | hypothetical protein | - |
| KFB96_RS14485 (KFB96_14485) | - | 3186330..3187142 (+) | 813 | WP_213457774.1 | diguanylate cyclase | - |
| KFB96_RS14490 (KFB96_14490) | - | 3187420..3192882 (+) | 5463 | WP_213457773.1 | RecQ family ATP-dependent DNA helicase | - |
| KFB96_RS14495 (KFB96_14495) | - | 3193368..3194234 (-) | 867 | WP_213457710.1 | IS110 family transposase | - |
| KFB96_RS14500 (KFB96_14500) | - | 3194865..3196004 (-) | 1140 | WP_213457771.1 | DUF4350 domain-containing protein | - |
| KFB96_RS14505 (KFB96_14505) | - | 3195994..3197580 (-) | 1587 | WP_213457770.1 | DUF4129 domain-containing protein | - |
| KFB96_RS14510 (KFB96_14510) | - | 3197570..3198556 (-) | 987 | WP_213457769.1 | stage II sporulation protein M | - |
| KFB96_RS14515 (KFB96_14515) | - | 3198553..3199251 (-) | 699 | WP_213457768.1 | RDD family protein | - |
| KFB96_RS14520 (KFB96_14520) | - | 3199316..3199927 (-) | 612 | WP_213458226.1 | chorismate pyruvate-lyase family protein | - |
| KFB96_RS14525 (KFB96_14525) | - | 3200365..3200565 (+) | 201 | WP_213457767.1 | alanine-zipper protein | - |
| KFB96_RS14530 (KFB96_14530) | - | 3200544..3201509 (-) | 966 | WP_213457766.1 | L,D-transpeptidase family protein | - |
| KFB96_RS14535 (KFB96_14535) | - | 3201543..3203591 (+) | 2049 | WP_213457765.1 | translation factor GTPase family protein | - |
| KFB96_RS14540 (KFB96_14540) | - | 3203687..3204202 (-) | 516 | WP_213458225.1 | histidine phosphatase family protein | - |
| KFB96_RS14545 (KFB96_14545) | - | 3204328..3205203 (-) | 876 | WP_213457764.1 | fructosamine kinase family protein | - |
| KFB96_RS14550 (KFB96_14550) | - | 3205261..3205890 (-) | 630 | WP_213457763.1 | HNH endonuclease | - |
| KFB96_RS14555 (KFB96_14555) | - | 3206157..3206339 (-) | 183 | WP_213457762.1 | hypothetical protein | - |
| KFB96_RS14560 (KFB96_14560) | - | 3206497..3208776 (+) | 2280 | WP_213457761.1 | primosomal protein N' | - |
| KFB96_RS14565 (KFB96_14565) | - | 3209403..3210101 (+) | 699 | WP_213465085.1 | response regulator transcription factor | - |
| KFB96_RS14570 (KFB96_14570) | - | 3210351..3210824 (-) | 474 | WP_213457759.1 | hypothetical protein | - |
| KFB96_RS14575 (KFB96_14575) | - | 3211227..3211538 (-) | 312 | WP_300970304.1 | IS4 family transposase | - |
| KFB96_RS26835 | - | 3211870..3212991 (+) | 1122 | Protein_2940 | recombinase family protein | - |
| KFB96_RS26840 | - | 3213845..3215041 (-) | 1197 | WP_213457758.1 | IS4 family transposase | - |
| KFB96_RS14585 (KFB96_14585) | - | 3215038..3215880 (-) | 843 | WP_300970306.1 | DUF4338 domain-containing protein | - |
| KFB96_RS14590 (KFB96_14590) | - | 3216018..3217463 (+) | 1446 | WP_213457757.1 | hypothetical protein | - |
| KFB96_RS14595 (KFB96_14595) | - | 3217895..3218203 (-) | 309 | WP_213457756.1 | helix-turn-helix domain-containing protein | - |
| KFB96_RS14600 (KFB96_14600) | - | 3218200..3218805 (-) | 606 | WP_213457755.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KFB96_RS14605 (KFB96_14605) | - | 3218798..3219043 (-) | 246 | WP_213457754.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| KFB96_RS14610 (KFB96_14610) | - | 3219204..3220187 (-) | 984 | WP_213457753.1 | DUF4351 domain-containing protein | - |
| KFB96_RS14615 (KFB96_14615) | - | 3220462..3221331 (+) | 870 | WP_213457752.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| KFB96_RS14620 (KFB96_14620) | - | 3221348..3221803 (-) | 456 | WP_213457751.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38250.03 Da Isoelectric Point: 7.0821
>NTDB_id=560542 KFB96_RS14450 WP_213457780.1 3179383..3180420(-) (pilT) [MAG: Thiocapsa sp. isolate M50B4]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDMRRINVPPLEHRSVHSLVYDIMNDKQRKDYEEFLETDFSFEIPGLAR
FRVNAFNQKRGAGAVFRTIPSKVLSLEELNAPESFKEIISVPRGLILVTGPTGSGKSTTLAAMVDHLNETEYAHILTIED
PIEFVHTSKKCLVNQREVHKDTLGFSEALRSALRQDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRI
IDVFPAAEKEMIRAMLSESLRSVVAQTLLKRVGGGRVAAHEIMIGTPAIRNLIREAKVAQMYSAIQTGQAHGMQTLDQNL
KELVQQGLVSRKDARMKAQNKDGFT
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDMRRINVPPLEHRSVHSLVYDIMNDKQRKDYEEFLETDFSFEIPGLAR
FRVNAFNQKRGAGAVFRTIPSKVLSLEELNAPESFKEIISVPRGLILVTGPTGSGKSTTLAAMVDHLNETEYAHILTIED
PIEFVHTSKKCLVNQREVHKDTLGFSEALRSALRQDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRI
IDVFPAAEKEMIRAMLSESLRSVVAQTLLKRVGGGRVAAHEIMIGTPAIRNLIREAKVAQMYSAIQTGQAHGMQTLDQNL
KELVQQGLVSRKDARMKAQNKDGFT
Nucleotide
Download Length: 1038 bp
>NTDB_id=560542 KFB96_RS14450 WP_213457780.1 3179383..3180420(-) (pilT) [MAG: Thiocapsa sp. isolate M50B4]
GTGGATATCGCCGAACTACTGGCCTTCAGCGTCAAGAACAACGCCTCGGACCTGCACCTCTCGGCCGGTCTGCCGCCGAT
GATCCGTGTCGACGGCGATATGCGCCGCATCAATGTCCCGCCGCTAGAGCATCGTTCGGTGCACTCGCTTGTCTACGACA
TCATGAACGACAAGCAGCGCAAGGACTACGAGGAGTTTCTGGAAACGGACTTCTCCTTCGAGATTCCGGGTCTGGCTCGG
TTCCGCGTCAACGCCTTCAACCAGAAGCGCGGCGCCGGTGCGGTTTTTCGGACCATCCCCTCCAAGGTCTTGTCGCTCGA
AGAGCTGAACGCACCCGAGAGTTTCAAGGAGATCATCAGTGTTCCGCGCGGCCTCATCCTGGTGACCGGGCCGACCGGCT
CGGGTAAGTCCACGACCCTCGCCGCGATGGTCGACCATCTCAACGAGACCGAGTACGCGCACATCCTCACCATCGAGGAC
CCGATCGAGTTCGTGCACACCAGCAAGAAATGTCTGGTCAACCAGCGCGAGGTGCACAAGGATACGCTGGGCTTCAGCGA
GGCGTTGCGCTCCGCGTTGCGTCAGGATCCGGACATCATCCTGGTCGGCGAGATGCGTGACCTCGAGACCATTCGGCTGG
CGATGACGGCGGCCGAAACCGGGCATCTGGTCTTCGGGACGCTGCACACCACCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTCTTTCCCGCGGCGGAGAAGGAGATGATCCGGGCGATGCTCTCGGAGTCGCTGCGCTCGGTCGTTGCGCAGAC
GCTCTTGAAGCGGGTCGGCGGCGGGCGGGTCGCCGCGCACGAGATCATGATCGGTACGCCGGCCATCCGTAACCTGATCC
GCGAGGCCAAGGTGGCCCAGATGTACTCGGCGATCCAGACCGGACAAGCGCACGGGATGCAGACCCTGGATCAGAACCTC
AAGGAGCTGGTCCAACAGGGCTTGGTGTCGCGCAAGGACGCGCGGATGAAGGCCCAGAACAAGGACGGCTTTACCTGA
GTGGATATCGCCGAACTACTGGCCTTCAGCGTCAAGAACAACGCCTCGGACCTGCACCTCTCGGCCGGTCTGCCGCCGAT
GATCCGTGTCGACGGCGATATGCGCCGCATCAATGTCCCGCCGCTAGAGCATCGTTCGGTGCACTCGCTTGTCTACGACA
TCATGAACGACAAGCAGCGCAAGGACTACGAGGAGTTTCTGGAAACGGACTTCTCCTTCGAGATTCCGGGTCTGGCTCGG
TTCCGCGTCAACGCCTTCAACCAGAAGCGCGGCGCCGGTGCGGTTTTTCGGACCATCCCCTCCAAGGTCTTGTCGCTCGA
AGAGCTGAACGCACCCGAGAGTTTCAAGGAGATCATCAGTGTTCCGCGCGGCCTCATCCTGGTGACCGGGCCGACCGGCT
CGGGTAAGTCCACGACCCTCGCCGCGATGGTCGACCATCTCAACGAGACCGAGTACGCGCACATCCTCACCATCGAGGAC
CCGATCGAGTTCGTGCACACCAGCAAGAAATGTCTGGTCAACCAGCGCGAGGTGCACAAGGATACGCTGGGCTTCAGCGA
GGCGTTGCGCTCCGCGTTGCGTCAGGATCCGGACATCATCCTGGTCGGCGAGATGCGTGACCTCGAGACCATTCGGCTGG
CGATGACGGCGGCCGAAACCGGGCATCTGGTCTTCGGGACGCTGCACACCACCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTCTTTCCCGCGGCGGAGAAGGAGATGATCCGGGCGATGCTCTCGGAGTCGCTGCGCTCGGTCGTTGCGCAGAC
GCTCTTGAAGCGGGTCGGCGGCGGGCGGGTCGCCGCGCACGAGATCATGATCGGTACGCCGGCCATCCGTAACCTGATCC
GCGAGGCCAAGGTGGCCCAGATGTACTCGGCGATCCAGACCGGACAAGCGCACGGGATGCAGACCCTGGATCAGAACCTC
AAGGAGCTGGTCCAACAGGGCTTGGTGTCGCGCAAGGACGCGCGGATGAAGGCCCAGAACAAGGACGGCTTTACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.