Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LSP20_RS03245 Genome accession   NZ_CP089065
Coordinates   685967..686590 (+) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain UNC_PaerCF34     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 680967..691590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP20_RS03220 (LSP20_03220) - 682052..682279 (-) 228 WP_003097347.1 DUF1161 domain-containing protein -
  LSP20_RS03225 (LSP20_03225) - 682463..682678 (-) 216 WP_003097345.1 dodecin -
  LSP20_RS03230 (LSP20_03230) trpI 682779..683666 (-) 888 WP_003122282.1 trpBA operon transcriptional activator TrpI -
  LSP20_RS03235 (LSP20_03235) trpB 683770..684978 (+) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  LSP20_RS03240 (LSP20_03240) trpA 684975..685781 (+) 807 WP_003097337.1 tryptophan synthase subunit alpha -
  LSP20_RS03245 (LSP20_03245) letA 685967..686590 (+) 624 WP_003111192.1 response regulator transcription factor Regulator
  LSP20_RS03250 (LSP20_03250) - 686598..686963 (+) 366 WP_003097330.1 Hpt domain-containing protein -
  LSP20_RS03255 (LSP20_03255) - 686942..687319 (-) 378 WP_003114635.1 DOPA 4,5-dioxygenase family protein -
  LSP20_RS03260 (LSP20_03260) - 687330..688244 (-) 915 WP_003122286.1 choline sulfate utilization transcriptional regulator -
  LSP20_RS03265 (LSP20_03265) betC 688357..689868 (+) 1512 WP_003120673.1 choline-sulfatase -
  LSP20_RS03270 (LSP20_03270) - 689885..690808 (+) 924 WP_003115797.1 choline ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=548518 LSP20_RS03245 WP_003111192.1 685967..686590(+) (letA) [Pseudomonas aeruginosa strain UNC_PaerCF34]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=548518 LSP20_RS03245 WP_003111192.1 685967..686590(+) (letA) [Pseudomonas aeruginosa strain UNC_PaerCF34]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGATGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362