Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   JYB88_RS04780 Genome accession   NZ_CP071504
Coordinates   1118221..1119258 (+) Length   345 a.a.
NCBI ID   WP_207322299.1    Uniprot ID   -
Organism   Shewanella cyperi strain FJAT-53726     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1113221..1124258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB88_RS04745 (JYB88_04745) hemW 1113294..1114430 (-) 1137 WP_207325653.1 radical SAM family heme chaperone HemW -
  JYB88_RS04750 (JYB88_04750) rdgB 1114434..1115033 (-) 600 WP_207325654.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  JYB88_RS04755 (JYB88_04755) - 1115132..1115566 (-) 435 WP_207325655.1 DUF4426 domain-containing protein -
  JYB88_RS04760 (JYB88_04760) yggU 1115644..1115931 (-) 288 WP_207325656.1 DUF167 family protein YggU -
  JYB88_RS04765 (JYB88_04765) - 1115931..1116479 (-) 549 WP_207322296.1 YggT family protein -
  JYB88_RS04770 (JYB88_04770) proC 1116520..1117335 (-) 816 WP_207325657.1 pyrroline-5-carboxylate reductase -
  JYB88_RS04775 (JYB88_04775) - 1117478..1118185 (-) 708 WP_207325658.1 YggS family pyridoxal phosphate-dependent enzyme -
  JYB88_RS04780 (JYB88_04780) pilT 1118221..1119258 (+) 1038 WP_207322299.1 type IV pilus twitching motility protein PilT Machinery gene
  JYB88_RS04785 (JYB88_04785) pilU 1119281..1120393 (+) 1113 WP_207322300.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  JYB88_RS04790 (JYB88_04790) - 1120546..1121043 (+) 498 WP_410176168.1 glutathione peroxidase -
  JYB88_RS04795 (JYB88_04795) hemH 1121049..1122053 (+) 1005 WP_228289692.1 ferrochelatase -
  JYB88_RS04800 (JYB88_04800) ruvX 1122147..1122569 (-) 423 WP_207325660.1 Holliday junction resolvase RuvX -
  JYB88_RS04805 (JYB88_04805) - 1122577..1123140 (-) 564 WP_207325661.1 YqgE/AlgH family protein -
  JYB88_RS04810 (JYB88_04810) yciH 1123157..1123486 (-) 330 WP_207322304.1 stress response translation initiation inhibitor YciH -
  JYB88_RS04815 (JYB88_04815) - 1123648..1123989 (-) 342 WP_207325662.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38335.01 Da        Isoelectric Point: 6.9096

>NTDB_id=545760 JYB88_RS04780 WP_207322299.1 1118221..1119258(+) (pilT) [Shewanella cyperi strain FJAT-53726]
MEITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALDHQGVHNLVYDIMNDKQRKDYEEHLEIDFSFEVPNLAR
FRVNAFNQSRGAAAVFRTIPSEILSLETLGAPEIFKKIASFPRGLVLVTGPTGSGKSTTLAGMIDYVNENRHDHILTIED
PIEFVHQNKQCLINQREVHRHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAGEKDMVRTMLSESLQAVISQTLIKKIGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMAHGMQTLEQCL
QNLVNRGLITREDAMAKSSNKQANF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=545760 JYB88_RS04780 WP_207322299.1 1118221..1119258(+) (pilT) [Shewanella cyperi strain FJAT-53726]
ATGGAAATCACTGAGTTACTTGCCTTTAGTGTAAAACACAAGGCCTCGGATCTGCACCTCTCAGCCGGTGTGCCTCCCAT
GATCCGTGTCGATGGCGAAGTTCGTAAAATCAATCTGCCGGCGCTGGATCACCAAGGCGTACACAATCTTGTGTACGACA
TTATGAATGACAAGCAGCGCAAAGACTATGAAGAGCACCTGGAAATCGACTTTTCCTTCGAAGTGCCCAATCTGGCCCGC
TTCCGTGTCAACGCCTTCAACCAATCCCGCGGCGCCGCAGCCGTGTTCCGTACCATTCCCAGTGAAATCCTGTCACTGGA
AACCCTGGGCGCGCCGGAAATTTTCAAGAAAATTGCCAGTTTTCCCCGCGGTCTGGTGCTGGTAACCGGCCCCACGGGTT
CAGGTAAAAGTACCACCCTGGCGGGCATGATAGATTATGTGAACGAGAACCGGCACGACCACATTCTCACCATCGAAGAC
CCTATCGAATTCGTGCACCAGAACAAGCAGTGCCTTATCAACCAGCGGGAAGTACACAGGCACACCCACAGCTTCAACGC
CGCGCTGCGCAGCGCACTGCGTGAAGACCCGGACGTGATCCTGGTGGGTGAGATGCGTGACCTGGAAACCATACGTCTGG
CGATGACGGCGGCAGAAACCGGCCACCTGGTGTTCGGTACCCTGCATACCACCTCGGCGGCCAAGACCATTGACCGTGTG
GTGGACGTGTTCCCCGCCGGTGAAAAAGACATGGTGCGTACCATGTTGTCGGAATCCCTGCAGGCGGTAATTTCCCAGAC
CCTGATTAAGAAAATCGGTGGCGGCCGGGTGGCGGCCCATGAGATCATGATGGGAACACCGGCCATTCGTAACCTTATCC
GGGAAGACAAGGTGGCGCAGATGTATTCTGCCATCCAAACGGGTATGGCCCACGGCATGCAAACCCTGGAGCAATGTCTG
CAGAACCTGGTGAACCGTGGCCTCATCACCCGTGAAGATGCCATGGCCAAGAGCTCCAACAAACAGGCTAACTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.409

99.13

0.797
  pilT Acinetobacter baumannii D1279779

80.409

99.13

0.797
  pilT Acinetobacter baumannii strain A118

80.409

99.13

0.797
  pilT Acinetobacter baylyi ADP1

77.843

99.42

0.774
  pilT Pseudomonas aeruginosa PAK

78.994

97.971

0.774
  pilT Pseudomonas stutzeri DSM 10701

77.101

100

0.771
  pilT Legionella pneumophila strain Lp02

75.66

98.841

0.748
  pilT Legionella pneumophila strain ERS1305867

75.66

98.841

0.748
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

72.7

97.681

0.71
  pilT Vibrio cholerae strain A1552

72.7

97.681

0.71
  pilT Neisseria meningitidis 8013

69.477

99.71

0.693
  pilT Neisseria gonorrhoeae MS11

69.186

99.71

0.69
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.147

98.261

0.493
  pilU Pseudomonas stutzeri DSM 10701

42.566

99.42

0.423
  pilU Vibrio cholerae strain A1552

41.399

99.42

0.412
  pilU Acinetobacter baylyi ADP1

40.356

97.681

0.394