Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JTY93_RS19215 Genome accession   NZ_CP070506
Coordinates   4306850..4307485 (-) Length   211 a.a.
NCBI ID   WP_029299724.1    Uniprot ID   A0AAJ3B5Y0
Organism   Pseudomonas hygromyciniae strain SDM007     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4301850..4312485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTY93_RS19180 (JTY93_19180) - 4302101..4302571 (-) 471 WP_169992754.1 (2Fe-2S)-binding protein -
  JTY93_RS30020 - 4302708..4302833 (-) 126 Protein_3819 outer membrane lipoprotein carrier protein LolA -
  JTY93_RS19185 (JTY93_19185) murB 4302965..4303984 (-) 1020 WP_205477390.1 UDP-N-acetylmuramate dehydrogenase -
  JTY93_RS19190 (JTY93_19190) - 4303981..4304445 (-) 465 WP_205477391.1 low molecular weight protein-tyrosine-phosphatase -
  JTY93_RS19195 (JTY93_19195) kdsB 4304445..4305209 (-) 765 WP_070994651.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JTY93_RS19200 (JTY93_19200) - 4305206..4305391 (-) 186 WP_003174668.1 Trm112 family protein -
  JTY93_RS19205 (JTY93_19205) lpxK 4305415..4306425 (-) 1011 WP_205477393.1 tetraacyldisaccharide 4'-kinase -
  JTY93_RS19210 (JTY93_19210) - 4306425..4306853 (-) 429 WP_029299722.1 biopolymer transporter ExbD -
  JTY93_RS19215 (JTY93_19215) exbB 4306850..4307485 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JTY93_RS19220 (JTY93_19220) comA 4307561..4309816 (-) 2256 WP_240344401.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JTY93_RS19225 (JTY93_19225) - 4309953..4310469 (+) 517 Protein_3828 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.06 Da        Isoelectric Point: 6.8772

>NTDB_id=540352 JTY93_RS19215 WP_029299724.1 4306850..4307485(-) (exbB) [Pseudomonas hygromyciniae strain SDM007]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPDHLLGQVWRWIKDKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=540352 JTY93_RS19215 WP_029299724.1 4306850..4307485(-) (exbB) [Pseudomonas hygromyciniae strain SDM007]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCTGATCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGGACAAGGAAAAACTCAAGGAACTGCGGGCCAATTCCCCCCTGGGCGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGTATTGAGGAGGCCGCCGCCCGGGTTATCCACGAGCTGGAGCGCTATAT
CAATGCCCTGGGCACCATCGCCGCGATGGCGCCGTTGCTCGGCTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCA
GCGCCTTTACCGGCTCGGGCATGACCACCAACGCCTCGGTATTGGCCGGGGGGATTTCCAAGGCCTTGATCACCACGGCT
GCGGGCCTGATGGTGGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGGTCCAGGGCGACCGTGACGTCGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867