Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JTY93_RS19220 Genome accession   NZ_CP070506
Coordinates   4307561..4309816 (-) Length   751 a.a.
NCBI ID   WP_240344401.1    Uniprot ID   -
Organism   Pseudomonas hygromyciniae strain SDM007     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4302561..4314816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTY93_RS30020 - 4302708..4302833 (-) 126 Protein_3819 outer membrane lipoprotein carrier protein LolA -
  JTY93_RS19185 (JTY93_19185) murB 4302965..4303984 (-) 1020 WP_205477390.1 UDP-N-acetylmuramate dehydrogenase -
  JTY93_RS19190 (JTY93_19190) - 4303981..4304445 (-) 465 WP_205477391.1 low molecular weight protein-tyrosine-phosphatase -
  JTY93_RS19195 (JTY93_19195) kdsB 4304445..4305209 (-) 765 WP_070994651.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JTY93_RS19200 (JTY93_19200) - 4305206..4305391 (-) 186 WP_003174668.1 Trm112 family protein -
  JTY93_RS19205 (JTY93_19205) lpxK 4305415..4306425 (-) 1011 WP_205477393.1 tetraacyldisaccharide 4'-kinase -
  JTY93_RS19210 (JTY93_19210) - 4306425..4306853 (-) 429 WP_029299722.1 biopolymer transporter ExbD -
  JTY93_RS19215 (JTY93_19215) exbB 4306850..4307485 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JTY93_RS19220 (JTY93_19220) comA 4307561..4309816 (-) 2256 WP_240344401.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JTY93_RS19225 (JTY93_19225) - 4309953..4310469 (+) 517 Protein_3828 DUF2062 domain-containing protein -
  JTY93_RS19230 (JTY93_19230) - 4310743..4313496 (+) 2754 WP_205477395.1 response regulator -
  JTY93_RS19235 (JTY93_19235) - 4313599..4314588 (+) 990 WP_205477396.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81996.53 Da        Isoelectric Point: 11.4152

>NTDB_id=540353 JTY93_RS19220 WP_240344401.1 4307561..4309816(-) (comA) [Pseudomonas hygromyciniae strain SDM007]
MRTGMFALALGLLALRLLPVLPPVGWLLVLPVVALMLLPFRTYPLAFFLLGLAWACFSAQRALDDRLVPGLDGQTRWLEG
RVSGLPQQANGVVRFELSDSRSRQDRLPQRIRVSWQGGPPVRSGERWRLAVTLKRPSGLLNFHGFDQEAWLLAQRVGATG
SVKDGQRLAPARHAWRDAVRQRLLAVDARGREAGLAALVLGDGSGLAAEDWRILQATGTVHLLVISGQHIGLLSGLIYAL
VAGLARYGCWPRRLPWLPWACGLAFAAALAYGLLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLIIEPL
ASLQPGFWLSFAAVGVLVLAFSGRLGPWRAWQAWTRAQWLIAIGLFPLLLILGLPISLSAPLANLFAVPWISLLVLPLAL
AGTLLLALPWLGGGLLWLAGGALDWLFTALAMLAVRLPAWMPAEVPVGYWLLSLLGALLLLMPKGIPFRLLGWPMLLLAV
FPPRESIPLGQVAVEQLDVGQGLSIVLRTRNHVLLYDAGPRVGDFDLGERVVLPALRKLGVSQVDLMLLSHADADHAGGA
AAVARGLPVKRVVGGETQGLPAFLHTQACVSGEQWEWDGVQFRLWQWADASNGNAKSCVLQVQANGERLLLTGDIDREAE
RALLATPLAVATDWLQAPHHGSRSSSSWPFVQRVAPKAVLISRGRGNSFGHPHPQVLARYRHFHSAIYDSAEQGAIRLRL
GAFQAPIMARSQRRFWRAPVIGSYQRPVPAT

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=540353 JTY93_RS19220 WP_240344401.1 4307561..4309816(-) (comA) [Pseudomonas hygromyciniae strain SDM007]
ATGCGTACAGGGATGTTTGCGCTGGCGTTGGGGCTGCTGGCGTTGCGCCTGCTGCCTGTCTTGCCGCCGGTCGGTTGGTT
GCTGGTGTTACCGGTGGTGGCGTTGATGCTGCTGCCGTTTCGTACTTATCCGCTGGCATTTTTCCTGTTGGGCCTGGCAT
GGGCCTGTTTCAGCGCGCAACGGGCCCTCGACGACCGGCTCGTCCCCGGGCTGGACGGCCAGACCCGCTGGCTGGAAGGG
CGCGTCAGCGGGCTACCACAGCAGGCCAATGGGGTGGTGCGTTTCGAGCTGAGCGATAGCCGGTCACGTCAGGACCGGCT
GCCCCAGCGCATCCGCGTGAGCTGGCAGGGCGGCCCCCCAGTGCGCAGCGGTGAGCGCTGGCGTTTGGCCGTGACCCTCA
AGCGTCCTTCCGGACTACTGAATTTCCATGGCTTCGACCAGGAGGCCTGGCTATTGGCCCAGCGTGTGGGGGCGACCGGG
TCGGTCAAGGATGGCCAGCGCCTGGCGCCGGCCCGGCATGCCTGGCGCGATGCCGTACGCCAGCGATTATTGGCAGTCGA
TGCTCGGGGCCGCGAAGCCGGGCTGGCTGCACTGGTGCTGGGTGACGGCTCTGGCCTGGCCGCCGAGGATTGGCGCATTT
TGCAGGCCACCGGCACCGTGCATCTATTGGTGATCTCTGGTCAACACATTGGCCTGTTGTCGGGGTTGATCTATGCACTG
GTGGCCGGGCTGGCCCGCTACGGCTGCTGGCCCAGGCGCTTGCCCTGGCTGCCTTGGGCATGCGGCCTGGCATTTGCCGC
TGCGCTGGCCTATGGCTTGCTGGCCGGTTTTGAAGTGCCGGTGCAACGGGCCTGTGTGATGGTGGGGCTGGTGCTGCTGT
GGCGCTTGCGGTTTCGCCATCTGGGGATCTGGTGGCCACTACTGCTGGCCCTGAATGCGGTATTGATCATCGAACCGCTG
GCCAGCCTGCAACCGGGTTTCTGGCTGTCGTTTGCTGCCGTGGGCGTGTTGGTGCTGGCCTTCAGTGGCCGCTTGGGGCC
CTGGCGTGCCTGGCAGGCCTGGACCCGTGCCCAATGGCTGATCGCTATTGGCCTGTTTCCGCTGCTGCTGATTCTCGGCC
TGCCCATCAGCTTGAGTGCGCCGCTGGCCAATCTGTTTGCCGTGCCGTGGATCAGTCTGCTGGTGCTGCCGTTGGCGCTG
GCGGGCACGCTGTTGCTGGCGCTGCCGTGGCTGGGCGGCGGCCTGCTGTGGCTAGCGGGTGGCGCACTGGATTGGCTGTT
TACGGCCCTGGCCATGCTGGCCGTGCGCTTGCCGGCCTGGATGCCTGCCGAGGTGCCTGTCGGCTACTGGTTGCTCAGCC
TGCTGGGAGCACTGCTGTTATTGATGCCCAAGGGCATTCCTTTTCGCCTGCTGGGTTGGCCCATGTTGCTGTTGGCAGTG
TTCCCGCCCCGTGAATCGATCCCGTTGGGGCAGGTGGCGGTGGAGCAACTGGATGTCGGCCAGGGCCTGTCGATAGTGCT
GCGCACCCGCAACCACGTGCTGTTGTATGACGCCGGCCCTCGGGTGGGGGATTTCGACCTCGGTGAGCGCGTGGTACTCC
CGGCGCTGCGCAAGCTGGGGGTTAGCCAAGTGGACTTGATGCTGCTCAGTCACGCTGATGCCGATCATGCCGGGGGCGCT
GCGGCGGTTGCGCGCGGGTTGCCGGTCAAACGGGTGGTGGGCGGGGAAACCCAGGGGCTGCCGGCGTTCCTTCATACCCA
GGCCTGTGTCAGCGGTGAGCAATGGGAGTGGGACGGTGTGCAGTTCCGACTGTGGCAATGGGCGGATGCCAGCAACGGCA
ACGCGAAGTCGTGCGTGCTGCAAGTCCAGGCCAATGGTGAACGGTTGTTGCTGACCGGCGATATAGACCGCGAGGCCGAG
CGGGCCTTGCTCGCCACGCCCCTGGCGGTCGCCACGGATTGGCTGCAAGCGCCCCATCATGGCAGTCGCAGTTCCTCGTC
ATGGCCGTTCGTCCAGCGAGTCGCCCCCAAGGCAGTGTTGATCTCTCGCGGGCGTGGCAACTCCTTTGGCCATCCGCACC
CGCAAGTGCTGGCGCGTTATCGGCATTTTCACAGCGCCATTTATGACAGCGCCGAACAGGGCGCCATCCGCCTGCGCCTG
GGGGCTTTCCAGGCGCCGATCATGGCACGCAGCCAGCGTCGTTTCTGGCGCGCGCCTGTCATTGGCAGTTACCAAAGGCC
GGTGCCTGCGACATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-661)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.446

95.606

0.578
  comA Ralstonia pseudosolanacearum GMI1000

35.159

100

0.368