Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SMSK321_RS07185 Genome accession   NZ_AEDT01000020
Coordinates   21872..22642 (+) Length   256 a.a.
NCBI ID   WP_000616131.1    Uniprot ID   -
Organism   Streptococcus mitis SK321     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 16872..27642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMSK321_RS07170 (SMSK321_0355) - 18882..19319 (+) 438 WP_000076494.1 CoA-binding protein -
  SMSK321_RS07175 (SMSK321_0356) - 19547..20557 (-) 1011 WP_000009164.1 YeiH family protein -
  SMSK321_RS07180 (SMSK321_0357) - 20706..21875 (+) 1170 WP_000366358.1 pyridoxal phosphate-dependent aminotransferase -
  SMSK321_RS07185 (SMSK321_0358) recO 21872..22642 (+) 771 WP_000616131.1 DNA repair protein RecO Machinery gene
  SMSK321_RS07190 (SMSK321_0359) plsX 22639..23631 (+) 993 WP_000717434.1 phosphate acyltransferase PlsX -
  SMSK321_RS07195 (SMSK321_0360) - 23637..23870 (+) 234 WP_000136445.1 acyl carrier protein -
  SMSK321_RS07200 (SMSK321_0362) - 24322..25512 (+) 1191 WP_000748702.1 N-acetylmuramoyl-L-alanine amidase family protein -
  SMSK321_RS07205 (SMSK321_0363) - 25594..26469 (-) 876 WP_001267147.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29832.30 Da        Isoelectric Point: 5.1672

>NTDB_id=53739 SMSK321_RS07185 WP_000616131.1 21872..22642(+) (recO) [Streptococcus mitis SK321]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRIG
QAFDFSFKYGACLCPDHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=53739 SMSK321_RS07185 WP_000616131.1 21872..22642(+) (recO) [Streptococcus mitis SK321]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAACTTTCGTGAGGATGACAAGCTAGTCAAGATTTT
TACAGAGCAGGCTGGCAAGCGCATGTTTTTCGTTAAACATGCTGGCCAGTCTAAGCTGGCGCCGGTTATTCAGCCCTTGG
TGCTGGCTCGATTTCTCTTACGAATCAATGATGACGGGCTCAGCTACATCGAGGACTATCATGAGGTGATGACCTTTCCC
AAGATTAATAGTGATCTCTTTGTCATGGCCTATGCGACCTATGTAGCGGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGTTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATCCAAATCTTGACTCGATTTGGGATTAGCCTCAATTTTAATGAGTGTGTCTTTTGCCATCGGATCGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGATCATTATCATGAAGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCTTATTTGCTCAATCAATTTCAAGCTATTGATTTTGAGACCTTGGAGACCATTTCGCTCAAGCCTG
AAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.047

100

0.98

Multiple sequence alignment