Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   JM642_RS06105 Genome accession   NZ_CP069350
Coordinates   1349817..1350854 (+) Length   345 a.a.
NCBI ID   WP_037420775.1    Uniprot ID   A0A501XE78
Organism   Shewanella sp. LZH-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1344817..1355854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM642_RS06075 (JM642_06075) rdgB 1345873..1346490 (-) 618 WP_011625625.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  JM642_RS06080 (JM642_06080) - 1346605..1347039 (-) 435 WP_172589097.1 DUF4426 domain-containing protein -
  JM642_RS06085 (JM642_06085) yggU 1347113..1347403 (-) 291 WP_037420787.1 DUF167 family protein YggU -
  JM642_RS06090 (JM642_06090) - 1347403..1347951 (-) 549 WP_037420784.1 YggT family protein -
  JM642_RS06095 (JM642_06095) proC 1348026..1348844 (-) 819 WP_144344750.1 pyrroline-5-carboxylate reductase -
  JM642_RS06100 (JM642_06100) - 1349068..1349781 (-) 714 WP_203433159.1 YggS family pyridoxal phosphate-dependent enzyme -
  JM642_RS06105 (JM642_06105) pilT 1349817..1350854 (+) 1038 WP_037420775.1 type IV pilus twitching motility protein PilT Machinery gene
  JM642_RS06110 (JM642_06110) pilU 1350864..1351976 (+) 1113 WP_037420771.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  JM642_RS06115 (JM642_06115) - 1352148..1352681 (+) 534 WP_037420768.1 glutathione peroxidase -
  JM642_RS06120 (JM642_06120) hemH 1352750..1353733 (+) 984 WP_172589094.1 ferrochelatase -
  JM642_RS06125 (JM642_06125) ruvX 1353797..1354222 (-) 426 WP_203433161.1 Holliday junction resolvase RuvX -
  JM642_RS06130 (JM642_06130) - 1354252..1354815 (-) 564 WP_069453279.1 YqgE/AlgH family protein -
  JM642_RS06135 (JM642_06135) yciH 1354884..1355213 (-) 330 WP_047533731.1 stress response translation initiation inhibitor YciH -
  JM642_RS06140 (JM642_06140) - 1355376..1355690 (-) 315 WP_037420754.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38278.98 Da        Isoelectric Point: 6.9096

>NTDB_id=534105 JM642_RS06105 WP_037420775.1 1349817..1350854(+) (pilT) [Shewanella sp. LZH-2]
MEITELLAFSVKHKASDLHLSAGISPMIRVDGEVRKINLPALDHQGVHSLVYDIMNDKQRKDFEEHLEIDFSFEVPNLAR
FRVNAFNQSRGAAAVFRTIPSDILSLEQLGAPEIFKKIASFPRGLVLVTGPTGSGKSTTLAAMVDYINENRHDHILTIED
PIEFVHPNKQCLINQREVHRHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAGEKDMVRTMLSESLQAVISQTLIKKIGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMAHGMQTLEQCL
QNLVNRGLITREDAMAKSSNKQATF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=534105 JM642_RS06105 WP_037420775.1 1349817..1350854(+) (pilT) [Shewanella sp. LZH-2]
ATGGAAATCACTGAGTTATTAGCTTTTAGTGTAAAACACAAAGCCTCGGATCTACACCTCTCTGCAGGGATATCTCCCAT
GATCCGTGTCGACGGTGAAGTGAGAAAAATCAATCTGCCCGCGCTCGATCATCAGGGTGTACACAGCCTTGTTTATGACA
TTATGAATGATAAACAACGCAAGGACTTTGAAGAACATTTAGAAATCGACTTTTCGTTCGAAGTCCCTAATTTAGCGCGT
TTCCGTGTGAACGCCTTTAACCAATCTCGCGGCGCTGCGGCGGTATTTCGTACCATTCCCAGTGATATCTTGTCACTTGA
GCAGTTAGGTGCGCCTGAAATTTTTAAAAAAATTGCCAGTTTTCCCCGTGGGTTAGTGTTAGTCACTGGGCCTACAGGTT
CCGGTAAGAGTACCACACTTGCGGCCATGGTCGATTACATCAATGAAAACCGCCATGATCATATCTTAACCATTGAAGAC
CCAATCGAATTTGTTCATCCCAACAAGCAATGTTTGATTAACCAACGGGAAGTGCATCGCCATACCCACAGCTTTAACGC
GGCACTGCGTAGCGCATTGCGTGAAGACCCTGACGTTATCCTCGTGGGTGAGATGCGTGACCTTGAAACCATTCGTCTGG
CGATGACTGCGGCTGAAACGGGTCACTTAGTTTTTGGTACCTTACACACCACGTCGGCGGCTAAGACTATTGACCGTGTG
GTTGACGTTTTCCCTGCCGGTGAAAAGGACATGGTTCGTACCATGTTATCTGAATCATTACAGGCGGTTATTTCGCAAAC
CCTGATTAAGAAAATCGGTGGTGGCCGTGTTGCTGCCCACGAAATTATGATGGGTACGCCCGCTATCCGAAATCTTATCC
GTGAAGATAAAGTGGCGCAGATGTACTCCGCCATTCAAACGGGGATGGCCCATGGCATGCAAACTCTTGAGCAGTGTCTG
CAAAACTTAGTTAACCGAGGCCTCATTACCCGTGAGGATGCCATGGCGAAGAGCTCAAACAAACAAGCGACGTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A501XE78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

80.117

99.13

0.794
  pilT Acinetobacter baumannii strain A118

80.117

99.13

0.794
  pilT Acinetobacter nosocomialis M2

80.117

99.13

0.794
  pilT Pseudomonas aeruginosa PAK

79.29

97.971

0.777
  pilT Acinetobacter baylyi ADP1

77.843

99.42

0.774
  pilT Pseudomonas stutzeri DSM 10701

77.485

99.13

0.768
  pilT Legionella pneumophila strain Lp02

74.78

98.841

0.739
  pilT Legionella pneumophila strain ERS1305867

74.78

98.841

0.739
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

72.404

97.681

0.707
  pilT Vibrio cholerae strain A1552

72.404

97.681

0.707
  pilT Neisseria meningitidis 8013

69.477

99.71

0.693
  pilT Neisseria gonorrhoeae MS11

69.186

99.71

0.69
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.442

98.261

0.496
  pilU Pseudomonas stutzeri DSM 10701

41.983

99.42

0.417
  pilU Vibrio cholerae strain A1552

41.691

99.42

0.414
  pilU Acinetobacter baylyi ADP1

40.059

97.681

0.391