Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   JM642_RS06110 Genome accession   NZ_CP069350
Coordinates   1350864..1351976 (+) Length   370 a.a.
NCBI ID   WP_037420771.1    Uniprot ID   -
Organism   Shewanella sp. LZH-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345864..1356976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM642_RS06075 (JM642_06075) rdgB 1345873..1346490 (-) 618 WP_011625625.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  JM642_RS06080 (JM642_06080) - 1346605..1347039 (-) 435 WP_172589097.1 DUF4426 domain-containing protein -
  JM642_RS06085 (JM642_06085) yggU 1347113..1347403 (-) 291 WP_037420787.1 DUF167 family protein YggU -
  JM642_RS06090 (JM642_06090) - 1347403..1347951 (-) 549 WP_037420784.1 YggT family protein -
  JM642_RS06095 (JM642_06095) proC 1348026..1348844 (-) 819 WP_144344750.1 pyrroline-5-carboxylate reductase -
  JM642_RS06100 (JM642_06100) - 1349068..1349781 (-) 714 WP_203433159.1 YggS family pyridoxal phosphate-dependent enzyme -
  JM642_RS06105 (JM642_06105) pilT 1349817..1350854 (+) 1038 WP_037420775.1 type IV pilus twitching motility protein PilT Machinery gene
  JM642_RS06110 (JM642_06110) pilU 1350864..1351976 (+) 1113 WP_037420771.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  JM642_RS06115 (JM642_06115) - 1352148..1352681 (+) 534 WP_037420768.1 glutathione peroxidase -
  JM642_RS06120 (JM642_06120) hemH 1352750..1353733 (+) 984 WP_172589094.1 ferrochelatase -
  JM642_RS06125 (JM642_06125) ruvX 1353797..1354222 (-) 426 WP_203433161.1 Holliday junction resolvase RuvX -
  JM642_RS06130 (JM642_06130) - 1354252..1354815 (-) 564 WP_069453279.1 YqgE/AlgH family protein -
  JM642_RS06135 (JM642_06135) yciH 1354884..1355213 (-) 330 WP_047533731.1 stress response translation initiation inhibitor YciH -
  JM642_RS06140 (JM642_06140) - 1355376..1355690 (-) 315 WP_037420754.1 hypothetical protein -
  JM642_RS06145 (JM642_06145) - 1355869..1356429 (+) 561 WP_055647824.1 DUF4136 domain-containing protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 41117.37 Da        Isoelectric Point: 6.5054

>NTDB_id=534106 JM642_RS06110 WP_037420771.1 1350864..1351976(+) (pilU) [Shewanella sp. LZH-2]
MDVRPFLKVMVERKASDLFITAGFPPSAKIDGELRPLAESAFTPAQSLDFVESVMTEAQKKEFHTTRECNFAFAVKELGR
FRVSAFWQRESPGCVMRRIETKIPEVDDLKLPPILKDLVMSKRGLIIMVGGTGTGKSTSLAALVGYRNAHARGHILTIED
PVEFVHDHRKSIITQREVGIDTESFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI
MHLVPESKHQQLLFDLSLNLRGIVAQQLVAKVDGTGRRAAIEVLINTPRVASLIAKNELHLLKETMAKSNEQGMQTFDQA
LLKLYVDGEISYADALHHADSPNDLRLMIKLQNKEPASSSFMEGVTLDMD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=534106 JM642_RS06110 WP_037420771.1 1350864..1351976(+) (pilU) [Shewanella sp. LZH-2]
ATGGATGTCCGTCCGTTTTTAAAAGTCATGGTGGAGCGTAAAGCCTCGGACTTGTTTATTACCGCAGGGTTTCCGCCGAG
CGCCAAAATCGATGGTGAGTTACGCCCGTTAGCCGAGAGTGCCTTCACGCCCGCGCAGTCTTTGGATTTTGTCGAGTCCG
TGATGACGGAGGCGCAAAAGAAGGAGTTTCACACGACTCGTGAGTGTAACTTTGCTTTTGCGGTTAAGGAGTTGGGGCGT
TTTCGCGTCAGCGCATTCTGGCAGCGTGAGTCTCCGGGTTGTGTTATGCGCCGGATTGAGACGAAAATCCCTGAAGTGGA
TGATTTAAAACTGCCACCGATTTTAAAAGATCTGGTGATGAGTAAGCGTGGACTTATCATCATGGTGGGGGGGACAGGGA
CCGGTAAATCGACTTCCTTAGCTGCATTAGTCGGTTACCGCAATGCCCATGCCCGCGGGCATATCTTGACGATTGAAGAC
CCTGTGGAATTTGTGCACGATCATCGCAAAAGTATCATTACCCAACGTGAAGTGGGCATAGATACAGAGTCCTTTGATGC
GGCGCTGAAAAGCTCGCTGCGTCAGGCGCCTGATGTGATCCTTATCGGTGAAATTCGAACCCAAGAAACCATGGAGTTTG
CGCTCTCCTTTGCTGAAACGGGCCATCTGTGTATGGCGACACTGCACGCGAACAACGCTAACCAAGCATTAGACCGGATT
ATGCACTTAGTGCCAGAAAGTAAACATCAACAGCTATTATTCGATTTGTCACTCAACCTGCGTGGCATTGTGGCGCAGCA
GCTGGTGGCTAAAGTTGATGGAACAGGTCGTCGGGCGGCGATTGAAGTCTTGATCAATACGCCACGTGTCGCGAGTTTGA
TTGCTAAAAATGAACTGCATCTACTCAAAGAAACCATGGCCAAATCGAATGAGCAAGGCATGCAGACCTTTGACCAAGCT
CTGTTAAAGCTCTATGTCGATGGGGAGATCAGTTATGCCGACGCGCTTCACCATGCTGACTCACCCAACGACTTGCGGTT
AATGATTAAATTGCAAAATAAAGAACCCGCCAGTTCGAGCTTTATGGAAGGCGTGACCTTGGATATGGATTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(113-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

60.108

100

0.603
  pilU Vibrio cholerae strain A1552

58.649

100

0.586
  pilU Acinetobacter baylyi ADP1

60.795

95.135

0.578
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

42.988

88.649

0.381
  pilT Vibrio cholerae strain A1552

42.988

88.649

0.381
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.29

93.243

0.376
  pilT Acinetobacter baumannii D1279779

39.474

92.432

0.365
  pilT Acinetobacter baumannii strain A118

39.474

92.432

0.365
  pilT Acinetobacter nosocomialis M2

39.474

92.432

0.365
  pilT Legionella pneumophila strain Lp02

40.785

89.459

0.365
  pilT Legionella pneumophila strain ERS1305867

40.785

89.459

0.365