Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   JGR68_RS02895 Genome accession   NZ_CP067113
Coordinates   619759..620796 (+) Length   345 a.a.
NCBI ID   WP_199360373.1    Uniprot ID   -
Organism   Luteimonas sp. MC1750     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 614759..625796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR68_RS02860 (JGR68_02860) - 614985..615188 (+) 204 WP_199360361.1 dodecin family protein -
  JGR68_RS02865 (JGR68_02865) - 615169..616002 (-) 834 WP_199360363.1 kinase -
  JGR68_RS02870 (JGR68_02870) pdxH 616068..616664 (+) 597 WP_199360365.1 pyridoxamine 5'-phosphate oxidase -
  JGR68_RS02875 (JGR68_02875) - 616661..617494 (+) 834 WP_234446569.1 ABC transporter substrate-binding protein -
  JGR68_RS02880 (JGR68_02880) - 617589..617984 (+) 396 WP_199360367.1 DoxX family protein -
  JGR68_RS02885 (JGR68_02885) proC 617993..618832 (-) 840 WP_199360369.1 pyrroline-5-carboxylate reductase -
  JGR68_RS02890 (JGR68_02890) - 618926..619624 (-) 699 WP_199360371.1 YggS family pyridoxal phosphate-dependent enzyme -
  JGR68_RS02895 (JGR68_02895) pilT 619759..620796 (+) 1038 WP_199360373.1 type IV pilus twitching motility protein PilT Machinery gene
  JGR68_RS02900 (JGR68_02900) pilU 620809..621939 (+) 1131 WP_199360375.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  JGR68_RS02905 (JGR68_02905) - 622054..622680 (+) 627 WP_199360377.1 superoxide dismutase -
  JGR68_RS02910 (JGR68_02910) - 622887..623348 (+) 462 WP_199360379.1 peptidylprolyl isomerase -
  JGR68_RS02915 (JGR68_02915) - 623355..625154 (-) 1800 WP_199360381.1 DUF4153 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38502.27 Da        Isoelectric Point: 6.7836

>NTDB_id=525108 JGR68_RS02895 WP_199360373.1 619759..620796(+) (pilT) [Luteimonas sp. MC1750]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIAGLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGTPRIFKELIDQPQGLILVTGPTGSGKSTTLAAMVDHINKTEYGHILTIED
PIEFVHTAQKCLINQREVHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGVPAIRNLIREDKVAQMYSAIQTGQQHGMMTLDQHL
QDLVKRAMITRAQAKDYAKDKRLFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=525108 JGR68_RS02895 WP_199360373.1 619759..620796(+) (pilT) [Luteimonas sp. MC1750]
ATGGATATCGCCGAACTTCTGGCGTTTTCGGTCAAGAACAAGGCGTCGGACCTGCATCTGTCGGCAGGCCTGCCGCCGAT
GATCCGCGTCGATGGCGACGTTCGCCGGATCAACATCCCGGCGCTCGACCACAAGCAGGTCCACGCGCTGGTCTACGACA
TCATGTCGGACAAGCAGCGCCGCGACTACGAGGAGTTCCTCGAGGTCGACTTCTCGTTCGAGATCGCCGGCCTGGCGCGC
TTCCGCGTCAACGCCTTCAACCAGAACCGCGGCGCGGGCGCGGTGTTCCGCACCATTCCGTCCGAGGTGCTGACCCTCGA
GGACCTCGGCACGCCGCGGATCTTCAAGGAGCTGATCGACCAGCCGCAGGGCCTGATCCTGGTCACCGGCCCGACCGGCT
CGGGCAAGTCGACCACGCTGGCGGCGATGGTCGACCACATCAACAAGACCGAGTACGGGCACATCCTCACCATCGAGGAC
CCGATCGAGTTCGTGCATACCGCGCAGAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACCCACGGCTTCAACGA
AGCGCTGCGCTCGGCGCTGCGCGAGGACCCCGACTACATCCTGGTCGGCGAGCTGCGCGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACGCTGCATACCTCGTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCCGCCGGCGAGAAGCCGATGGTGCGCTCGATGCTGTCGGAGTCGCTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGCGGGCGCACCGCGGCCTGGGAAATCATGGTCGGCGTGCCGGCCATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCGGCGATCCAGACCGGCCAGCAGCACGGCATGATGACGCTCGACCAGCACCTG
CAGGACCTGGTGAAGCGCGCCATGATCACGCGCGCCCAGGCCAAGGACTATGCCAAGGACAAGCGGCTGTTCGAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

79.07

99.71

0.788
  pilT Acinetobacter baumannii strain A118

79.07

99.71

0.788
  pilT Acinetobacter nosocomialis M2

79.07

99.71

0.788
  pilT Pseudomonas stutzeri DSM 10701

77.907

99.71

0.777
  pilT Acinetobacter baylyi ADP1

77.326

99.71

0.771
  pilT Pseudomonas aeruginosa PAK

78.171

98.261

0.768
  pilT Legionella pneumophila strain Lp02

73.837

99.71

0.736
  pilT Legionella pneumophila strain ERS1305867

73.837

99.71

0.736
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

64.62

99.13

0.641
  pilT Neisseria gonorrhoeae MS11

64.327

99.13

0.638
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.23

100

0.406
  pilU Vibrio cholerae strain A1552

39.943

100

0.403
  pilU Acinetobacter baylyi ADP1

40.588

98.551

0.4