Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K6T46_RS03860 Genome accession   NZ_CP081928
Coordinates   830421..831770 (-) Length   449 a.a.
NCBI ID   WP_109475232.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190510E1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 825421..836770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T46_RS03840 (K6T46_03840) - 825766..827190 (-) 1425 WP_004918166.1 redoxin domain-containing protein -
  K6T46_RS03845 (K6T46_03845) - 827355..828215 (+) 861 WP_004918164.1 GLPGLI family protein -
  K6T46_RS03850 (K6T46_03850) - 828257..828721 (-) 465 WP_214227641.1 heme-binding domain-containing protein -
  K6T46_RS03855 (K6T46_03855) - 828728..830374 (-) 1647 WP_214227639.1 Ig-like domain-containing domain -
  K6T46_RS03860 (K6T46_03860) radA 830421..831770 (-) 1350 WP_109475232.1 DNA repair protein RadA Machinery gene
  K6T46_RS03865 (K6T46_03865) - 831863..832627 (+) 765 WP_214227637.1 enoyl-CoA hydratase/isomerase family protein -
  K6T46_RS03870 (K6T46_03870) - 832706..834841 (-) 2136 WP_154469451.1 S8 family peptidase -
  K6T46_RS03875 (K6T46_03875) - 835191..835688 (+) 498 WP_154469450.1 RNA polymerase sigma factor -
  K6T46_RS03880 (K6T46_03880) - 835745..836569 (+) 825 WP_214227629.1 FecR family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49681.18 Da        Isoelectric Point: 7.2681

>NTDB_id=524468 K6T46_RS03860 WP_109475232.1 830421..831770(-) (radA) [Riemerella anatipestifer strain 20190510E1-1]
MAKLKTVYYCQNCGSQHSKWHGQCQNCGQWNTLVEEIAEKTTSKNYAGDFGRQHLINIIEVETQAEQRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLYTETSIEKILHEAKKL
QPDFMIVDSIQTLHSQVMESSPGTVSQIRECASEVIKFAKATNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMISAGLKEIKNPSEVLITKKSEEFSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRSGFQLGAKDVFLNITGGIKTDDPALDLAVVAAILSSNEDIAVSEHYCFAGEIGLSGEIRPV
PQIEKRISEAEKLGYHKIFVSKQNKIPKKKHDIKIVEVSKIEDFHEEIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=524468 K6T46_RS03860 WP_109475232.1 830421..831770(-) (radA) [Riemerella anatipestifer strain 20190510E1-1]
GTGGCTAAATTAAAAACAGTATATTATTGTCAGAATTGTGGTTCACAACATTCCAAATGGCACGGGCAATGCCAAAATTG
TGGACAATGGAACACCTTAGTGGAAGAAATTGCAGAAAAAACAACCTCTAAAAATTATGCAGGAGATTTTGGAAGACAGC
ACCTCATCAATATCATAGAAGTAGAAACACAAGCCGAGCAACGCATTAAAACTCCAAGCGAAGAACTTAACAGGGTTTTG
GGTGGCGGTATTGTTTTAGGTTCGGTAACCCTTATTGGCGGAGAACCAGGTATAGGGAAATCTACATTACTGTTGCAATT
AGCCCTTAAAATGAAGAAAAAAATCCTCTATGTTTCGGGGGAAGAAAGTGCCTCTCAAATCAAAATGAGAGCAGATAGAC
TAACGGAACTTCAAAATCCGAATTGTTTTTTATACACCGAAACTTCAATAGAGAAAATTTTGCACGAAGCCAAAAAACTT
CAGCCCGATTTTATGATTGTGGACTCTATACAAACTTTACATTCGCAGGTGATGGAAAGTTCCCCAGGTACGGTGTCTCA
GATTAGAGAATGTGCTTCGGAAGTTATAAAGTTTGCAAAAGCGACTAACACGCCTGTTTTTTTAGTGGGACATATTACTA
AAGATGGGCAAATAGCTGGACCAAAAGTATTGGAGCATATGGTAGATGTAGTTCTTAATTTTGATGGTGATAGAAACCAT
TTGTTTAGACTTTTAAGAGCGAATAAAAATCGTTTTGGTTCTACTGCGGAGATTGGTATTTATGAGATGATTTCAGCAGG
ATTGAAAGAAATTAAAAATCCTTCGGAAGTGCTTATTACCAAAAAATCCGAGGAATTTTCAGGAAATGCGGTGGCAGTAA
CGCTAGAAGGTAACCGCCCTATGTTGCTAGAAATACAAGCCCTTGTAAGTACAGCCGTGTATGGTACACCACAGAGAAGT
TCTACGGGTTTTGATGCTAAAAGGCTCAATATGCTTTTGGCAGTTTTGGAGAAACGCTCTGGTTTCCAACTCGGTGCTAA
AGATGTATTCTTAAATATTACAGGAGGTATTAAAACGGACGACCCTGCTTTAGATTTGGCTGTGGTAGCTGCTATCTTGT
CTTCCAACGAGGATATTGCAGTGTCGGAGCATTATTGTTTTGCTGGAGAGATTGGTCTTAGTGGAGAGATTCGTCCTGTG
CCACAAATAGAAAAACGCATCTCCGAAGCCGAAAAGTTAGGCTATCATAAAATTTTTGTTTCTAAACAAAATAAAATACC
AAAGAAAAAACACGATATAAAAATTGTGGAAGTTTCTAAAATAGAAGACTTTCACGAAGAGATATTTTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(336-424)

AAA domain (AAA_25)

(63-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

47.473

100

0.481
  radA Streptococcus pneumoniae Rx1

47.368

100

0.481
  radA Streptococcus pneumoniae D39

47.368

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.368

100

0.481
  radA Streptococcus pneumoniae R6

47.368

100

0.481
  radA Streptococcus mitis SK321

47.241

100

0.477
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.611

96.214

0.468