Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | THIVI_RS13900 | Genome accession | NC_018012 |
| Coordinates | 3151668..3152723 (+) | Length | 351 a.a. |
| NCBI ID | WP_014779207.1 | Uniprot ID | I3YCQ7 |
| Organism | Thiocystis violascens DSM 198 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3146668..3157723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| THIVI_RS13885 (Thivi_2861) | - | 3148239..3149705 (+) | 1467 | WP_014779204.1 | glutamate synthase subunit beta | - |
| THIVI_RS13890 (Thivi_2862) | - | 3149801..3150232 (+) | 432 | WP_014779205.1 | DUF29 domain-containing protein | - |
| THIVI_RS13895 (Thivi_2863) | pilU | 3150391..3151641 (+) | 1251 | WP_014779206.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| THIVI_RS13900 (Thivi_2864) | pilU | 3151668..3152723 (+) | 1056 | WP_014779207.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| THIVI_RS13905 (Thivi_2865) | gspD | 3152811..3155009 (-) | 2199 | WP_245537275.1 | type II secretion system secretin GspD | - |
| THIVI_RS13910 (Thivi_2866) | - | 3155055..3155642 (-) | 588 | WP_014779209.1 | type II secretion system protein N | - |
| THIVI_RS13915 (Thivi_2867) | gspM | 3155639..3156253 (-) | 615 | WP_014779210.1 | type II secretion system protein GspM | - |
| THIVI_RS13920 (Thivi_2868) | - | 3156253..3157353 (-) | 1101 | WP_014779211.1 | PilN domain-containing protein | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39017.93 Da Isoelectric Point: 6.3194
>NTDB_id=51654 THIVI_RS13900 WP_014779207.1 3151668..3152723(+) (pilU) [Thiocystis violascens DSM 198]
MDINPYLEMMIRHKASDLFFTAGTPVKIKIEGVIRSIGDTILTPAFCREALASVMDEPQLRELEQERELDFAIALEERAR
FRVNAYYQRGQTAMVLRYIRAEIPTLTELGLPPVLSQLIMNRRGIILMVGATGSGKSTTLAAMLDHRNASASGHIITIED
PIEFVHPHKQCIVSQREVGLDTKSYAHALKSALREAPDVILIGEIRNRETMEAAIELAGTGHLAVSTLHANNAHQAMERI
VNLFPQEMHKTLFMDLSIYLRAILSQRLVRTKAGTRRAAIETLVNTPHIADLIRDGRVDAINEAMQQSGHEGVKTFDEAL
LELYREGAITLEEALANADSAPNLEAKIHFG
MDINPYLEMMIRHKASDLFFTAGTPVKIKIEGVIRSIGDTILTPAFCREALASVMDEPQLRELEQERELDFAIALEERAR
FRVNAYYQRGQTAMVLRYIRAEIPTLTELGLPPVLSQLIMNRRGIILMVGATGSGKSTTLAAMLDHRNASASGHIITIED
PIEFVHPHKQCIVSQREVGLDTKSYAHALKSALREAPDVILIGEIRNRETMEAAIELAGTGHLAVSTLHANNAHQAMERI
VNLFPQEMHKTLFMDLSIYLRAILSQRLVRTKAGTRRAAIETLVNTPHIADLIRDGRVDAINEAMQQSGHEGVKTFDEAL
LELYREGAITLEEALANADSAPNLEAKIHFG
Nucleotide
Download Length: 1056 bp
>NTDB_id=51654 THIVI_RS13900 WP_014779207.1 3151668..3152723(+) (pilU) [Thiocystis violascens DSM 198]
ATGGACATCAATCCTTATCTCGAAATGATGATCCGCCATAAGGCGTCGGATCTCTTTTTTACCGCTGGCACGCCGGTCAA
GATCAAGATCGAGGGCGTTATCCGCTCCATCGGAGACACGATTCTGACGCCGGCATTCTGTCGCGAGGCGCTGGCCTCCG
TGATGGACGAGCCGCAGTTGCGGGAACTGGAGCAGGAGCGGGAACTGGATTTTGCCATCGCCCTGGAGGAGCGCGCCCGT
TTTCGTGTGAATGCCTATTATCAGCGCGGCCAGACCGCCATGGTGCTGCGCTACATTCGCGCCGAGATTCCCACCCTGAC
TGAGCTTGGCTTACCGCCGGTGCTGTCCCAACTCATCATGAACCGGCGCGGGATCATCCTCATGGTCGGCGCCACCGGCT
CCGGCAAGTCGACCACGTTGGCGGCCATGCTCGACCATCGCAACGCGAGCGCGTCGGGACATATCATCACGATCGAAGAC
CCCATCGAATTCGTGCATCCGCATAAGCAGTGCATCGTCAGTCAGCGCGAGGTGGGGCTCGATACCAAAAGCTATGCCCA
TGCGCTGAAGAGCGCGCTACGCGAGGCGCCGGACGTGATCCTGATCGGCGAAATCCGCAACCGCGAGACCATGGAGGCGG
CCATCGAACTGGCGGGAACCGGCCATCTGGCGGTCTCCACGCTGCATGCGAACAACGCGCATCAGGCCATGGAGCGGATC
GTCAATCTGTTCCCCCAAGAGATGCACAAAACCCTGTTCATGGATCTGTCGATCTACCTGCGGGCCATCCTGTCGCAACG
TCTGGTGCGCACCAAGGCTGGAACCCGCCGCGCCGCGATCGAGACGCTGGTCAACACGCCCCACATCGCTGATCTGATCC
GCGACGGTCGTGTCGACGCGATCAACGAGGCGATGCAGCAGAGCGGTCATGAAGGGGTCAAGACCTTCGACGAGGCGCTG
CTGGAACTCTATCGCGAGGGCGCGATCACCCTGGAAGAGGCACTGGCCAACGCGGATTCGGCGCCGAACCTGGAGGCGAA
GATCCACTTCGGTTAA
ATGGACATCAATCCTTATCTCGAAATGATGATCCGCCATAAGGCGTCGGATCTCTTTTTTACCGCTGGCACGCCGGTCAA
GATCAAGATCGAGGGCGTTATCCGCTCCATCGGAGACACGATTCTGACGCCGGCATTCTGTCGCGAGGCGCTGGCCTCCG
TGATGGACGAGCCGCAGTTGCGGGAACTGGAGCAGGAGCGGGAACTGGATTTTGCCATCGCCCTGGAGGAGCGCGCCCGT
TTTCGTGTGAATGCCTATTATCAGCGCGGCCAGACCGCCATGGTGCTGCGCTACATTCGCGCCGAGATTCCCACCCTGAC
TGAGCTTGGCTTACCGCCGGTGCTGTCCCAACTCATCATGAACCGGCGCGGGATCATCCTCATGGTCGGCGCCACCGGCT
CCGGCAAGTCGACCACGTTGGCGGCCATGCTCGACCATCGCAACGCGAGCGCGTCGGGACATATCATCACGATCGAAGAC
CCCATCGAATTCGTGCATCCGCATAAGCAGTGCATCGTCAGTCAGCGCGAGGTGGGGCTCGATACCAAAAGCTATGCCCA
TGCGCTGAAGAGCGCGCTACGCGAGGCGCCGGACGTGATCCTGATCGGCGAAATCCGCAACCGCGAGACCATGGAGGCGG
CCATCGAACTGGCGGGAACCGGCCATCTGGCGGTCTCCACGCTGCATGCGAACAACGCGCATCAGGCCATGGAGCGGATC
GTCAATCTGTTCCCCCAAGAGATGCACAAAACCCTGTTCATGGATCTGTCGATCTACCTGCGGGCCATCCTGTCGCAACG
TCTGGTGCGCACCAAGGCTGGAACCCGCCGCGCCGCGATCGAGACGCTGGTCAACACGCCCCACATCGCTGATCTGATCC
GCGACGGTCGTGTCGACGCGATCAACGAGGCGATGCAGCAGAGCGGTCATGAAGGGGTCAAGACCTTCGACGAGGCGCTG
CTGGAACTCTATCGCGAGGGCGCGATCACCCTGGAAGAGGCACTGGCCAACGCGGATTCGGCGCCGAACCTGGAGGCGAA
GATCCACTTCGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
51.705 |
100 |
0.519 |
| pilU | Acinetobacter baylyi ADP1 |
50.286 |
99.715 |
0.501 |
| pilU | Vibrio cholerae strain A1552 |
50.145 |
98.291 |
0.493 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.658 |
96.581 |
0.422 |
| pilT | Pseudomonas aeruginosa PAK |
40.988 |
98.006 |
0.402 |
| pilT | Acinetobacter baylyi ADP1 |
40.882 |
96.866 |
0.396 |
| pilT | Neisseria meningitidis 8013 |
39.655 |
99.145 |
0.393 |
| pilT | Neisseria gonorrhoeae MS11 |
40.533 |
96.296 |
0.39 |
| pilT | Pseudomonas stutzeri DSM 10701 |
39.826 |
98.006 |
0.39 |
| pilT | Legionella pneumophila strain Lp02 |
41.515 |
94.017 |
0.39 |
| pilT | Legionella pneumophila strain ERS1305867 |
41.515 |
94.017 |
0.39 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.541 |
94.872 |
0.385 |
| pilT | Vibrio cholerae strain A1552 |
40.541 |
94.872 |
0.385 |
| pilT | Acinetobacter baumannii strain A118 |
40.419 |
95.157 |
0.385 |
| pilT | Acinetobacter baumannii D1279779 |
40.419 |
95.157 |
0.385 |
| pilT | Acinetobacter nosocomialis M2 |
40.419 |
95.157 |
0.385 |