Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   KW2_RS02945 Genome accession   NC_022369
Coordinates   579902..582130 (+) Length   742 a.a.
NCBI ID   WP_021036840.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris KW2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 574902..587130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW2_RS02920 (kw2_0586) - 575874..576572 (-) 699 WP_021036838.1 hypothetical protein -
  KW2_RS02925 (kw2_0587) - 576999..577346 (-) 348 WP_011834619.1 XRE family transcriptional regulator -
  KW2_RS02935 (kw2_0589) rnz 578112..579035 (+) 924 WP_011834620.1 ribonuclease Z -
  KW2_RS02940 (kw2_0590) - 579028..579729 (+) 702 WP_021036839.1 SDR family NAD(P)-dependent oxidoreductase -
  KW2_RS02945 (kw2_0591) recJ 579902..582130 (+) 2229 WP_021036840.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  KW2_RS02950 (kw2_0592) - 582254..582766 (+) 513 WP_011834623.1 adenine phosphoribosyltransferase -
  KW2_RS02955 (kw2_0593) rpoE 582983..583546 (+) 564 WP_015082149.1 DNA-directed RNA polymerase subunit delta -
  KW2_RS02960 (kw2_0594) mltG 583682..585322 (+) 1641 WP_041168579.1 endolytic transglycosylase MltG -
  KW2_RS02965 (kw2_0595) greA 585383..585853 (+) 471 WP_011834626.1 transcription elongation factor GreA -
  KW2_RS02970 (kw2_0596) - 586047..586502 (+) 456 WP_011834627.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83807.75 Da        Isoelectric Point: 4.6314

>NTDB_id=51653 KW2_RS02945 WP_021036840.1 579902..582130(+) (recJ) [Lactococcus cremoris subsp. cremoris KW2]
MIKAKYDWKLDETVLSEDFLKISKKHKLDELTSRVLYQRGIHDESEIEKFLKPNLEDLHDPFLLHDMEKATQRILSAIEQ
GENILIYGDYDADGMTAASVMKSALDELGAEAQVYLPNRFTDGYGPNLDVYQYYINNENINLIITVDNGVAGVEAIAWAQ
ENGVDVIITDHHSMPDQLPNAYAIIHPEHPESQYPFKYLAGVGVAFKVACALLEYAPREMLDLVAIGTIADMVSLTDENR
ILVAHGLKVLAQTERAGLQELMKYAGVDFDKVTEETVGFQIAPRLNALGRLDDPNPAIELLTGWDEDEAHEIAKMIDQKN
SERKDIVEKIHNEALAMLTDEPVQILYHKDWHKGVLGIVAGRLLEQIHKPVIMLAEEEGILRGSARSIDSFDIFKALNAH
RELFIAFGGHKQAAGMTLALENVEAVKKAMSDFVVDNHLDLSKKSPLEVADRCHLDEISLATINNLAKLAPFGMDNPKPR
FLVEDYKVIQSRSMGKDNAHLKLKIQEEKQQIDAVYFQHGSEELEFEQAETKLVVTLSSNSWNGNTSLQLMIEDADSIGV
ELLDIRSRQISIPKEANIFSQNQLKHGIMEDVLVIEETPVDLAGLSVLEEAVSKAASDDFKIIYFKNKITDSYYLTGSGT
REQFAKLYKAIYQFPEFDVRYKLESLADYLNIPHLLLVKMIKIFEELEFVNIDNGLMTVNKAAQKREISESTIYQELEKI
VKMQELFALAPVKEIYQKLLEK

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=51653 KW2_RS02945 WP_021036840.1 579902..582130(+) (recJ) [Lactococcus cremoris subsp. cremoris KW2]
ATGATAAAAGCGAAATATGATTGGAAATTGGACGAGACAGTCCTTTCGGAAGATTTTCTAAAAATAAGCAAAAAACATAA
ATTAGACGAATTAACAAGTCGAGTGCTTTATCAAAGAGGGATTCATGATGAATCTGAAATTGAAAAATTTTTAAAGCCGA
ATTTGGAAGATTTGCATGACCCATTTTTGCTTCACGACATGGAAAAAGCAACACAAAGAATTTTATCAGCTATTGAACAA
GGCGAAAATATTCTGATTTATGGGGATTATGATGCTGATGGGATGACAGCTGCTTCTGTCATGAAATCTGCTCTTGACGA
ATTAGGCGCCGAAGCTCAGGTTTACTTACCAAATCGATTTACTGACGGTTATGGTCCAAACCTTGATGTTTATCAATATT
ATATTAACAATGAAAATATCAATCTTATTATCACTGTGGATAATGGGGTAGCAGGGGTGGAGGCAATCGCTTGGGCTCAA
GAAAATGGAGTGGATGTCATTATTACTGACCACCATTCAATGCCTGACCAACTGCCTAATGCCTATGCTATTATTCATCC
AGAGCATCCAGAAAGTCAATATCCTTTTAAATATTTGGCCGGTGTTGGAGTTGCTTTTAAAGTCGCCTGTGCCCTCTTAG
AATATGCACCCCGCGAAATGCTAGATTTGGTGGCCATTGGGACGATTGCTGATATGGTTAGTTTAACTGACGAAAATCGA
ATTTTAGTCGCTCATGGTCTTAAAGTTCTTGCCCAAACAGAACGTGCGGGTTTGCAAGAATTAATGAAATACGCCGGCGT
CGACTTTGACAAGGTCACCGAGGAAACTGTCGGTTTTCAAATCGCGCCACGGTTAAATGCTTTAGGACGGCTTGATGACC
CTAATCCAGCAATTGAGTTATTAACAGGTTGGGACGAAGATGAAGCTCATGAAATTGCTAAAATGATTGACCAAAAAAAT
TCTGAGCGAAAAGATATCGTGGAAAAAATCCACAATGAAGCTCTAGCAATGTTGACAGATGAGCCTGTCCAAATTTTATA
TCACAAAGATTGGCATAAGGGGGTTTTAGGAATTGTGGCTGGGCGTTTATTGGAACAAATCCATAAACCAGTAATTATGC
TCGCCGAAGAAGAGGGGATTTTGCGCGGATCTGCTCGCTCAATTGATAGTTTTGATATTTTTAAAGCACTAAATGCCCAC
CGCGAACTTTTTATTGCCTTTGGAGGGCATAAACAGGCGGCGGGTATGACTCTAGCTCTGGAAAATGTTGAAGCGGTTAA
AAAAGCAATGAGTGATTTTGTTGTGGATAATCATTTAGATCTTTCTAAAAAGAGTCCACTTGAAGTTGCGGATCGCTGTC
ATTTGGATGAAATTTCACTTGCTACTATTAATAATTTAGCAAAATTAGCCCCTTTTGGTATGGATAATCCCAAACCGCGA
TTCTTAGTAGAAGATTATAAAGTCATTCAAAGTCGTAGCATGGGCAAAGATAATGCACATCTTAAATTAAAAATTCAAGA
AGAAAAGCAACAAATTGATGCCGTTTATTTTCAACATGGCTCAGAAGAGCTAGAATTTGAACAAGCCGAAACTAAACTTG
TGGTGACACTTTCAAGTAATAGTTGGAATGGGAACACCAGTCTTCAACTGATGATTGAAGATGCCGATTCAATAGGTGTG
GAACTCCTTGATATACGGAGCAGACAAATTTCTATCCCCAAAGAGGCTAATATTTTTTCTCAAAATCAGCTAAAACATGG
TATAATGGAAGATGTGCTTGTCATCGAAGAGACACCTGTAGATTTAGCAGGTTTGTCAGTATTAGAAGAAGCTGTCAGTA
AAGCAGCATCGGATGATTTTAAAATAATCTATTTTAAAAATAAAATCACTGATAGCTATTATTTAACAGGAAGTGGAACA
CGTGAACAATTTGCAAAGCTCTATAAGGCGATTTATCAATTTCCAGAATTTGATGTTCGTTATAAGCTTGAGTCTCTTGC
AGATTATTTGAATATTCCTCATCTCTTGCTTGTCAAGATGATAAAAATCTTTGAAGAACTTGAATTTGTCAACATTGACA
ATGGCCTAATGACCGTTAATAAAGCGGCTCAAAAACGTGAAATTTCTGAAAGTACAATTTACCAAGAATTAGAAAAAATT
GTAAAAATGCAAGAACTCTTTGCCTTAGCGCCAGTTAAAGAAATTTATCAAAAATTATTAGAAAAATAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-434)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(592-737)

RecJ OB domain (RecJ_OB)

(454-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

56.779

100

0.57
  recJ Bacillus subtilis subsp. subtilis str. 168

36.457

100

0.383

Multiple sequence alignment