Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6H54_RS29125 Genome accession   NZ_CP066006
Coordinates   6398476..6400092 (+) Length   538 a.a.
NCBI ID   WP_034389509.1    Uniprot ID   -
Organism   Delftia acidovorans strain FDAARGOS_997     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6393476..6405092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H54_RS29100 (I6H54_29100) argS 6393663..6395360 (+) 1698 WP_034389507.1 arginine--tRNA ligase -
  I6H54_RS29105 (I6H54_29105) - 6395381..6396070 (+) 690 WP_012202602.1 SPOR domain-containing protein -
  I6H54_RS29110 (I6H54_29110) - 6396152..6396802 (+) 651 WP_013804754.1 thiol:disulfide interchange protein DsbA/DsbL -
  I6H54_RS29115 (I6H54_29115) lptA 6396974..6397636 (+) 663 WP_013804753.1 lipopolysaccharide transport periplasmic protein LptA -
  I6H54_RS29120 (I6H54_29120) lptB 6397633..6398421 (+) 789 WP_012202605.1 LPS export ABC transporter ATP-binding protein -
  I6H54_RS29125 (I6H54_29125) rpoN/rpoN1 6398476..6400092 (+) 1617 WP_034389509.1 RNA polymerase factor sigma-54 Machinery gene
  I6H54_RS29130 (I6H54_29130) rtcR 6400131..6401738 (-) 1608 WP_034389511.1 RNA repair transcriptional activator RtcR -
  I6H54_RS29135 (I6H54_29135) - 6402436..6403575 (+) 1140 WP_034389514.1 slipin family protein -
  I6H54_RS29140 (I6H54_29140) - 6403632..6404129 (+) 498 WP_034389516.1 hypothetical protein -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59287.38 Da        Isoelectric Point: 4.6737

>NTDB_id=516280 I6H54_RS29125 WP_034389509.1 6398476..6400092(+) (rpoN/rpoN1) [Delftia acidovorans strain FDAARGOS_997]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANEEGDHDAAAGTREPAAPGAEATESFQESR
ADQPSAAVEWEPSSDASSGDAVETSGTAESLSWEGDGQTTSGNDDRDWGSDAPSSRTRGQGEEDEADATELARSAESLTD
HLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDDLEECEELVHRFTVALRLLQSLEPVGVGARDLAE
CLTLQLRDHLADAEREGNGSAEDEDRQAVLRTALDICAQPMDLLARRDLRKLASLCGAREERLREALVLITRLEPRPGRR
FADVQRQIVVPDVIVRPVRSGAGRMDFSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASST
AVRALIKQFVAAEDPKKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=516280 I6H54_RS29125 WP_034389509.1 6398476..6400092(+) (rpoN/rpoN1) [Delftia acidovorans strain FDAARGOS_997]
TTGAAGCCCGGTCTGTCGCTGCGCGTCTCCCAGCATCTTTCGCTTACTCCCCAGCTGCAGCAGTCGATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTGGAGCAGATGCTGGGCGACAACCCCTTCCTGGAGCTGGCGAACGAGGAGG
GCGATCACGATGCGGCTGCCGGCACCCGCGAGCCTGCCGCGCCCGGCGCCGAGGCCACGGAGTCCTTCCAGGAAAGCCGC
GCAGACCAGCCTTCGGCGGCGGTGGAGTGGGAGCCCTCGTCGGACGCATCCTCCGGCGATGCCGTGGAGACTTCCGGCAC
GGCCGAGTCCCTGAGCTGGGAAGGCGACGGCCAGACCACCTCGGGCAACGATGACCGCGACTGGGGCAGCGATGCGCCCT
CCAGCCGCACGCGCGGGCAGGGCGAGGAAGACGAGGCCGATGCCACCGAACTGGCTCGCAGCGCCGAAAGCCTGACCGAC
CACCTGCACCGTCAGGCCCTGAGCCTGCGCCTGGGCGAGGTGGACCGCGCCGCACTGCGCTTTCTGATCGAGAACCTCAA
CGATGACGGCTACCTGGAAGACCCGCTCGACGAGCTGGCACAGGGCCTGGCGGGCGACGATCTGGAGGAGTGCGAGGAAC
TGGTGCACCGCTTCACCGTGGCGCTGCGCCTGCTGCAAAGCCTGGAGCCCGTGGGCGTGGGCGCGCGCGACCTGGCCGAA
TGCCTGACGCTGCAACTGCGCGACCATCTGGCCGATGCCGAGCGCGAAGGCAACGGCAGTGCCGAGGACGAAGACCGGCA
GGCCGTGCTGCGCACCGCGCTGGACATCTGCGCCCAGCCCATGGACCTGCTTGCGCGGCGCGACCTGCGCAAGCTCGCCA
GCCTGTGCGGTGCGCGCGAGGAGCGGCTGCGCGAGGCGCTGGTGCTGATCACCCGACTGGAGCCACGCCCGGGCCGGCGC
TTTGCCGACGTGCAGCGCCAGATCGTCGTGCCCGACGTCATCGTGCGCCCCGTGCGCAGCGGCGCGGGCCGCATGGACTT
CAGCGTGCAGCTCAACCCCGACGTCATGCCCAAGCTGCGCGTGCACGACATCTATGCCAGCGCGCTGCGCAGCCACAGGG
GCAGCGAAGGCCATGCAGCGCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTGTCGCAGGCCATCGTGGAGCGCCAGAAGAATTTCTTCGTGCATGGCGAGCTGGCCATGCGCCCGCT
GGTGCTGCGCGACATTGCCGATGCGCTGGGCCTGCATGAATCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCA
CGCCGCAGGGCACCTACGAGCTCAAGTACTTCTTCGGCTCGGGCCTGGGCACCGAGGCCGGTGGCAATGCCTCCAGCACT
GCCGTGCGCGCGCTGATCAAGCAGTTCGTCGCGGCCGAAGATCCCAAGAAGCCGCTGTCGGACAACCAGCTCGCCGACAT
GCTCAAGGAGCAGGGTATCGAATGCGCGCGGCGCACGGTGGCCAAGTACCGCGAGCTGCTCAAGATCCCGCCGACCACGC
TGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-365)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.296

100

0.515