Detailed information NTG0507769

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: I2438_RS05825
• Genome accession: NZ_CP065190
• Coordinates: 1181693..1182922 (-)
• Length: 409 a.a.
• NCBI ID: WP_012677889.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ36
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1176693..1187922

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2438_RS05810 (HCFMJIKG_01148)	hupY	1177700..1180711 (-)	3012	WP_231146233.1	leucine-rich repeat adhesin HupY/LrrG	-
I2438_RS05815 (HCFMJIKG_01149)	-	1180797..1181042 (-)	246	WP_024273183.1	hypothetical protein	-
I2438_RS05820 (HCFMJIKG_01150)	yihA	1181084..1181683 (-)	600	WP_012677890.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
I2438_RS05825 (HCFMJIKG_01151)	clpX	1181693..1182922 (-)	1230	WP_012677889.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
I2438_RS05830 (HCFMJIKG_01152)	-	1182958..1183128 (-)	171	WP_012515696.1	hypothetical protein	-
I2438_RS05835 (HCFMJIKG_01153)	-	1183148..1183645 (-)	498	WP_021320814.1	dihydrofolate reductase	-
I2438_RS05840 (HCFMJIKG_01154)	-	1183726..1184565 (-)	840	WP_165626051.1	thymidylate synthase	-
I2438_RS05845 (HCFMJIKG_01155)	-	1184750..1185925 (+)	1176	WP_231146232.1	hydroxymethylglutaryl-CoA synthase	-
I2438_RS05850 (HCFMJIKG_01156)	-	1185912..1187195 (+)	1284	WP_231146535.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45197.77 Da
• Isoelectric Point: 4.5726

>NTDB_id=507769 I2438_RS05825 WP_012677889.1 1181693..1182922(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVIKVRITKEAVEG
QSKPILEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=507769 I2438_RS05825 WP_012677889.1 1181693..1182922(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGCAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAAGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAGGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAAAAATCAAACATTCTGATGATTGGACCAACAGGCTCAGGAAAGACCTTTTTGGCACAGACCCTAGCTAAGA
GTCTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAAGATGTGGAAAATATC
CTCCTGAAATTAATTCAAGCAGCTGATTACAATGTTGAGCGTGCAGAGCGCGGCATTATTTATGTTGACGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCCATTACTCGTGATGTATCAGGAGAGGGTGTCCAGCAAGCCTTGCTAAAAATCA
TTGAAGGAACGGTTGCCAGTGTTCCACCACAGGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCCTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCATTGCTGAGGATATTCAAAAATTTG
GTCTGATTCCCGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTATTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GGGGGCTCTGGAGGCTATTGCAGGTAGGGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATTGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAATCAAGGTACGCATTACTAAGGAAGCTGTCGAAGGT
CAATCAAAGCCTATTTTAGAGATAGCCTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.753	100	0.888
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.853	98.044	0.577