Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KE3_RS11060 Genome accession   NC_021900
Coordinates   1869147..1869359 (-) Length   70 a.a.
NCBI ID   WP_228380498.1    Uniprot ID   -
Organism   Streptococcus lutetiensis 033     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1864147..1874359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS09360 (KE3_1932) - 1865146..1866099 (+) 954 WP_020917573.1 S66 peptidase family protein -
  KE3_RS11045 (KE3_1933) - 1866187..1866387 (-) 201 WP_020917574.1 hypothetical protein -
  KE3_RS11050 (KE3_1934) - 1866443..1866694 (-) 252 WP_020917575.1 hypothetical protein -
  KE3_RS09375 (KE3_1936) - 1867068..1867343 (-) 276 WP_020917576.1 hypothetical protein -
  KE3_RS09380 (KE3_1937) - 1867570..1868688 (-) 1119 WP_020917577.1 hypothetical protein -
  KE3_RS11055 - 1868880..1869104 (-) 225 WP_228380497.1 hypothetical protein -
  KE3_RS11060 comA 1869147..1869359 (-) 213 WP_228380498.1 ATP-binding cassette domain-containing protein Regulator
  KE3_RS09390 (KE3_1938) - 1869409..1869624 (-) 216 WP_043895140.1 hypothetical protein -
  KE3_RS09395 (KE3_1939) - 1870190..1871080 (-) 891 WP_043895142.1 helix-turn-helix domain-containing protein -
  KE3_RS09400 (KE3_1940) - 1871311..1873206 (-) 1896 WP_020917580.1 M13 family metallopeptidase -
  KE3_RS09405 - 1873370..1873915 (-) 546 Protein_1855 class C sortase -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 7900.11 Da        Isoelectric Point: 8.0700

>NTDB_id=50095 KE3_RS11060 WP_228380498.1 1869147..1869359(-) (comA) [Streptococcus lutetiensis 033]
MIKIEHLSKTYKRLVLNDISVTFPERQVSVIVGINGSGKTIFLDCVVGFKRPSEGEIWIDGHHNQSDAFK

Nucleotide


Download         Length: 213 bp        

>NTDB_id=50095 KE3_RS11060 WP_228380498.1 1869147..1869359(-) (comA) [Streptococcus lutetiensis 033]
ATGATTAAGATTGAACACTTATCTAAAACATATAAGCGCTTGGTTTTAAATGATATTTCAGTGACTTTTCCTGAAAGACA
AGTGAGTGTTATTGTTGGTATTAATGGCAGTGGAAAGACGATATTTCTAGATTGTGTCGTTGGTTTCAAACGCCCGAGTG
AAGGTGAGATTTGGATCGACGGTCACCATAATCAATCTGATGCCTTCAAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(16-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae Rx1

44.444

90

0.4
  comA Streptococcus pneumoniae D39

44.444

90

0.4
  comA Streptococcus pneumoniae R6

44.444

90

0.4
  comA Streptococcus mitis SK321

46.552

82.857

0.386
  comA Streptococcus mitis NCTC 12261

46.552

82.857

0.386

Multiple sequence alignment