Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IS507_RS17545 Genome accession   NZ_CP064194
Coordinates   3617708..3618235 (-) Length   175 a.a.
NCBI ID   WP_000695061.1    Uniprot ID   A0A506J6X2
Organism   Acinetobacter baumannii strain X4-65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3612708..3623235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS507_RS17525 - 3612893..3613768 (-) 876 WP_000218802.1 hypothetical protein -
  IS507_RS17530 aroB 3613784..3614866 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  IS507_RS17535 aroK 3614895..3615464 (-) 570 WP_000643712.1 shikimate kinase AroK -
  IS507_RS17540 pilQ 3615476..3617641 (-) 2166 WP_001017028.1 type IV pilus secretin PilQ Machinery gene
  IS507_RS17545 pilP 3617708..3618235 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  IS507_RS17550 pilO 3618246..3618986 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  IS507_RS17555 pilN 3618983..3619624 (-) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  IS507_RS17560 pilM 3619624..3620682 (-) 1059 WP_279450293.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19445.72 Da        Isoelectric Point: 8.9898

>NTDB_id=500070 IS507_RS17545 WP_000695061.1 3617708..3618235(-) (pilP) [Acinetobacter baumannii strain X4-65]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRIIHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=500070 IS507_RS17545 WP_000695061.1 3617708..3618235(-) (pilP) [Acinetobacter baumannii strain X4-65]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTATCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A506J6X2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714