Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM26_RS20120 Genome accession   NZ_CP074853
Coordinates   3797387..3798016 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 7_11_88A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3792387..3803016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM26_RS20105 (KIM26_19800) helD 3792629..3794683 (-) 2055 WP_001297106.1 DNA helicase IV -
  KIM26_RS20110 (KIM26_19805) yccF 3794806..3795252 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KIM26_RS20115 (KIM26_19810) yccS 3795262..3797424 (+) 2163 WP_136751609.1 YccS family putative transporter -
  KIM26_RS20120 (KIM26_19815) sxy/tfoX 3797387..3798016 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM26_RS20125 (KIM26_19820) sulA 3798235..3798744 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM26_RS20130 (KIM26_19825) ompA 3799101..3800141 (+) 1041 WP_000750416.1 porin OmpA -
  KIM26_RS20135 (KIM26_19830) matP 3800216..3800668 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM26_RS20140 (KIM26_19835) ycbZ 3800854..3802614 (+) 1761 WP_000156528.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=493792 KIM26_RS20120 WP_000839153.1 3797387..3798016(-) (sxy/tfoX) [Escherichia coli strain 7_11_88A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=493792 KIM26_RS20120 WP_000839153.1 3797387..3798016(-) (sxy/tfoX) [Escherichia coli strain 7_11_88A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1