Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   IMY14_RS13200 Genome accession   NZ_CP063150
Coordinates   2538560..2538991 (-) Length   143 a.a.
NCBI ID   WP_015384089.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2533560..2543991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS13150 sinI 2533755..2533928 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  IMY14_RS13155 sinR 2533962..2534297 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  IMY14_RS13160 tasA 2534390..2535175 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  IMY14_RS13165 sipW 2535239..2535811 (-) 573 WP_080030740.1 signal peptidase I SipW -
  IMY14_RS13170 tapA 2535795..2536556 (-) 762 WP_047182870.1 amyloid fiber anchoring/assembly protein TapA -
  IMY14_RS13175 yqzG 2536826..2537152 (+) 327 WP_047183570.1 YqzG/YhdC family protein -
  IMY14_RS13180 spoIITA 2537194..2537373 (-) 180 WP_003230176.1 YqzE family protein -
  IMY14_RS13185 comGG 2537445..2537819 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  IMY14_RS13190 comGF 2537820..2538203 (-) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  IMY14_RS13195 comGE 2538229..2538576 (-) 348 WP_047182872.1 ComG operon protein 5 Machinery gene
  IMY14_RS13200 comGD 2538560..2538991 (-) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  IMY14_RS13205 comGC 2538981..2539277 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  IMY14_RS13210 comGB 2539291..2540328 (-) 1038 WP_047182873.1 comG operon protein ComGB Machinery gene
  IMY14_RS13215 comGA 2540315..2541385 (-) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  IMY14_RS13225 corA 2541795..2542748 (-) 954 WP_015483432.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16064.60 Da        Isoelectric Point: 9.6754

>NTDB_id=493403 IMY14_RS13200 WP_015384089.1 2538560..2538991(-) (comGD) [Bacillus subtilis strain s-16]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=493403 IMY14_RS13200 WP_015384089.1 2538560..2538991(-) (comGD) [Bacillus subtilis strain s-16]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTTGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTATCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

97.902

100

0.979