Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   JAB4_RS05630 Genome accession   NZ_CP062062
Coordinates   1241193..1242236 (-) Length   347 a.a.
NCBI ID   WP_070222601.1    Uniprot ID   A0A853SY87
Organism   Janthinobacterium sp. HH102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1236193..1247236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAB4_RS05615 (JAB4_011070) - 1237270..1239378 (-) 2109 WP_070222604.1 EAL domain-containing protein -
  JAB4_RS05620 (JAB4_011080) - 1239563..1240048 (-) 486 WP_070222603.1 glutathione peroxidase -
  JAB4_RS05625 (JAB4_011090) pilU 1240050..1241189 (-) 1140 WP_175444773.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  JAB4_RS05630 (JAB4_011100) pilT 1241193..1242236 (-) 1044 WP_070222601.1 type IV pilus twitching motility protein PilT Machinery gene
  JAB4_RS05635 (JAB4_011110) - 1242307..1243008 (+) 702 WP_070222600.1 YggS family pyridoxal phosphate-dependent enzyme -
  JAB4_RS05640 (JAB4_011120) proC 1243025..1243855 (+) 831 WP_070222597.1 pyrroline-5-carboxylate reductase -
  JAB4_RS05645 (JAB4_011130) - 1243868..1244584 (-) 717 WP_070222596.1 anti-sigma factor -
  JAB4_RS05650 (JAB4_011140) - 1244581..1245180 (-) 600 WP_227742100.1 sigma-70 family RNA polymerase sigma factor -
  JAB4_RS05655 (JAB4_011150) - 1245238..1245795 (-) 558 WP_070222591.1 DUF3455 domain-containing protein -
  JAB4_RS05660 (JAB4_011160) - 1245885..1246232 (-) 348 WP_070222589.1 hypothetical protein -
  JAB4_RS05665 (JAB4_011170) - 1246229..1246606 (-) 378 WP_083287244.1 phage holin family protein -
  JAB4_RS05670 (JAB4_011180) - 1246828..1247184 (-) 357 WP_070222586.1 DUF883 family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38070.55 Da        Isoelectric Point: 6.6918

>NTDB_id=485977 JAB4_RS05630 WP_070222601.1 1241193..1242236(-) (pilT) [Janthinobacterium sp. HH102]
MDISELLAFSVSNKASDLHLSSGLPPMIRVHGDVRRLNVAPLEHKEVHSMIYDIMNDSQRKAYEEALECDFSFEIPGLAR
FRVNAYNQERGASAVLRTIPSKVLTLEDLNAPRIFGELAMRPRGLVLVTGPTGSGKSTTLAAMVNHVNERLNHHILTIED
PIEFVHEPKKCLINQREVGSHTHSFSNALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKSIDRI
IDVFPAEEKEMVRAMLSESLQAVISQNLLKTKDGAGRVAAHEIMLATPAVRNLIREAKVAQMYSAIQTGSNVGMQTLDQC
LSDLVRRGTISAETARSAAKSPENFPG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=485977 JAB4_RS05630 WP_070222601.1 1241193..1242236(-) (pilT) [Janthinobacterium sp. HH102]
ATGGACATCTCCGAACTTCTCGCTTTCTCCGTCAGCAACAAGGCTTCCGACCTGCACCTGTCTTCCGGCCTGCCGCCGAT
GATACGGGTCCATGGCGACGTGCGCCGCCTCAACGTGGCGCCGCTCGAGCACAAGGAAGTGCACAGCATGATCTACGACA
TCATGAACGACAGCCAGCGCAAGGCGTATGAAGAGGCGCTCGAGTGCGATTTCTCGTTCGAAATTCCCGGCCTGGCCCGC
TTCCGCGTCAACGCCTACAACCAGGAACGCGGCGCCTCGGCCGTGCTGCGCACGATTCCGTCGAAAGTGCTGACCCTGGA
AGACCTGAACGCGCCGCGCATCTTCGGCGAACTGGCCATGCGCCCGCGGGGCCTCGTGCTGGTGACGGGTCCGACGGGTT
CGGGCAAGTCGACCACCCTGGCGGCCATGGTGAACCACGTCAACGAACGGCTGAATCACCATATTCTGACCATCGAAGAC
CCGATCGAATTCGTACATGAGCCGAAGAAATGCCTGATCAACCAGCGCGAGGTAGGCTCGCACACGCATTCGTTCAGCAA
TGCGCTGCGCTCGGCCCTGCGCGAAGACCCGGACGTCATTCTGGTGGGCGAATTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACGGCGGCCGAAACGGGCCACCTCGTGTTCGGCACCCTGCATACCTCGTCGGCGGCAAAATCGATCGACCGCATC
ATCGACGTCTTCCCCGCCGAGGAAAAGGAAATGGTGCGCGCCATGCTGTCCGAGTCCTTGCAAGCCGTCATTTCGCAGAA
CTTGCTCAAAACCAAGGACGGCGCTGGGCGCGTGGCCGCGCATGAAATCATGCTGGCCACGCCGGCCGTGCGCAACCTGA
TCCGCGAAGCGAAAGTGGCGCAAATGTATTCGGCCATCCAGACGGGCAGCAACGTGGGCATGCAGACGCTGGACCAGTGC
CTGTCCGACCTGGTGCGGCGCGGCACGATCTCGGCGGAAACTGCCCGCTCGGCCGCCAAGTCGCCCGAAAACTTCCCCGG
ATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853SY87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

75.652

99.424

0.752
  pilT Acinetobacter baumannii D1279779

75.652

99.424

0.752
  pilT Acinetobacter baumannii strain A118

75.652

99.424

0.752
  pilT Pseudomonas aeruginosa PAK

75.362

99.424

0.749
  pilT Pseudomonas stutzeri DSM 10701

74.493

99.424

0.741
  pilT Acinetobacter baylyi ADP1

73.913

99.424

0.735
  pilT Legionella pneumophila strain Lp02

71.681

97.695

0.7
  pilT Legionella pneumophila strain ERS1305867

71.681

97.695

0.7
  pilT Neisseria meningitidis 8013

68.986

99.424

0.686
  pilT Neisseria gonorrhoeae MS11

68.696

99.424

0.683
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.326

97.118

0.683
  pilT Vibrio cholerae strain A1552

70.326

97.118

0.683
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.174

99.424

0.519
  pilU Pseudomonas stutzeri DSM 10701

41.449

99.424

0.412
  pilU Acinetobacter baylyi ADP1

41.329

99.712

0.412
  pilU Vibrio cholerae strain A1552

40.58

99.424

0.403