Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   J8G07_RS04170 Genome accession   NZ_CP072612
Coordinates   813508..814302 (+) Length   264 a.a.
NCBI ID   WP_007614969.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain G10     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 808508..819302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS04150 walR 808770..809477 (+) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -
  J8G07_RS04155 walK 809484..811319 (+) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  J8G07_RS04160 yycH 811309..812667 (+) 1359 WP_032875419.1 two-component system activity regulator YycH -
  J8G07_RS04165 yycI 812654..813493 (+) 840 WP_007614971.1 two-component system regulatory protein YycI -
  J8G07_RS04170 vicX 813508..814302 (+) 795 WP_007614969.1 MBL fold metallo-hydrolase Regulator
  J8G07_RS04175 htrA 814389..815585 (+) 1197 WP_007614967.1 S1C family serine protease Regulator
  J8G07_RS19490 - 816210..816326 (+) 117 Protein_782 winged helix-turn-helix domain-containing protein -
  J8G07_RS04185 - 816323..817741 (+) 1419 WP_032875425.1 HAMP domain-containing sensor histidine kinase -
  J8G07_RS04190 - 817973..818980 (+) 1008 WP_032875428.1 ThiF family adenylyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29130.19 Da        Isoelectric Point: 6.0271

>NTDB_id=484336 J8G07_RS04170 WP_007614969.1 813508..814302(+) (vicX) [Bacillus amyloliquefaciens strain G10]
MGLQFSVLASGSTGNAFYLETDEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=484336 J8G07_RS04170 WP_007614969.1 813508..814302(+) (vicX) [Bacillus amyloliquefaciens strain G10]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAATGCGTTTTATCTGGAGACAGATGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGACTTCCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTCTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTCGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATTGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527