Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   J8G07_RS04175 Genome accession   NZ_CP072612
Coordinates   814389..815585 (+) Length   398 a.a.
NCBI ID   WP_007614967.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain G10     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 809389..820585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS04155 walK 809484..811319 (+) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  J8G07_RS04160 yycH 811309..812667 (+) 1359 WP_032875419.1 two-component system activity regulator YycH -
  J8G07_RS04165 yycI 812654..813493 (+) 840 WP_007614971.1 two-component system regulatory protein YycI -
  J8G07_RS04170 vicX 813508..814302 (+) 795 WP_007614969.1 MBL fold metallo-hydrolase Regulator
  J8G07_RS04175 htrA 814389..815585 (+) 1197 WP_007614967.1 S1C family serine protease Regulator
  J8G07_RS19490 - 816210..816326 (+) 117 Protein_782 winged helix-turn-helix domain-containing protein -
  J8G07_RS04185 - 816323..817741 (+) 1419 WP_032875425.1 HAMP domain-containing sensor histidine kinase -
  J8G07_RS04190 - 817973..818980 (+) 1008 WP_032875428.1 ThiF family adenylyltransferase -
  J8G07_RS04195 - 818977..820299 (+) 1323 WP_032875431.1 ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 42633.44 Da        Isoelectric Point: 7.4580

>NTDB_id=484337 J8G07_RS04175 WP_007614967.1 814389..815585(+) (htrA) [Bacillus amyloliquefaciens strain G10]
MDYNRDDEQYASEQPRRSKRGYFLSSLIGVIVGAALMAFLLPYWTGGDHGESSKSTSQRLGSEQVKTVNVNVNDAVTNMV
SRVSDSVVGVLNIQKTDIWGEGGEAGSGSGVIYKKNGNTSYIVTNHHVIEGATEIEISLKDGSRVPAELIGSDRLMDLAV
LKVKSDKIKSAAQFGNSDQVKVGEPVIAIGNPLGLEFAGSVTQGIISGTERAVPVDSNGDGQPDWNAEVLQTDAAINPGN
SGGALMDISGKVVGINSMKIAESAVEGIGLSIPSKLVIPVIQDLEKYGEVRRPFLGIEMKSLTDIASYHWSQTLKLPKGV
KTGAVIMGVDAFSPAGKAGLKKLDVITGFDGHKVNDVVDLRERLYRKKIGDRVNITFYRSGKKKTAEVKLTEADRLQK

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=484337 J8G07_RS04175 WP_007614967.1 814389..815585(+) (htrA) [Bacillus amyloliquefaciens strain G10]
GTGGATTATAATCGCGATGATGAACAGTACGCCTCCGAACAGCCCCGCCGCAGCAAGAGAGGGTACTTTCTATCAAGTCT
GATCGGCGTCATCGTCGGGGCCGCGCTCATGGCATTCCTGCTGCCGTACTGGACAGGCGGAGACCATGGGGAAAGCAGCA
AAAGCACCAGCCAGCGTCTCGGCAGCGAACAGGTGAAAACAGTCAACGTAAATGTCAATGACGCTGTCACGAATATGGTC
AGCCGTGTATCGGATTCGGTAGTCGGCGTTCTCAATATCCAAAAGACCGATATTTGGGGAGAGGGCGGCGAAGCGGGAAG
CGGGTCGGGCGTCATTTACAAAAAGAACGGAAACACTTCTTATATCGTAACCAATCACCATGTCATTGAAGGTGCGACTG
AGATTGAGATCAGCCTGAAGGATGGCTCACGCGTGCCTGCTGAGCTGATCGGGAGCGACCGTCTGATGGATCTCGCCGTG
CTGAAGGTGAAGTCTGATAAGATCAAATCGGCCGCCCAGTTCGGCAATTCCGATCAGGTCAAAGTCGGAGAACCGGTCAT
TGCGATCGGAAATCCGCTCGGACTTGAATTTGCGGGATCAGTGACACAGGGGATCATTTCAGGCACGGAAAGGGCGGTGC
CTGTTGACTCAAACGGCGACGGACAGCCGGATTGGAATGCGGAAGTGCTGCAGACCGATGCCGCGATTAACCCCGGCAAC
AGCGGCGGCGCTTTGATGGATATATCGGGCAAGGTGGTCGGCATCAACTCAATGAAGATCGCTGAATCCGCCGTTGAAGG
CATCGGCCTGTCCATCCCGTCAAAGCTTGTCATTCCCGTTATTCAGGATTTAGAAAAATACGGAGAAGTCAGACGGCCTT
TCCTCGGTATTGAGATGAAATCCTTAACGGATATTGCGAGTTACCATTGGAGCCAGACGCTGAAACTTCCGAAAGGCGTT
AAAACCGGGGCGGTCATTATGGGTGTCGACGCGTTTTCACCGGCGGGAAAAGCGGGTTTGAAAAAGCTCGACGTGATTAC
CGGGTTCGACGGACATAAGGTCAATGACGTTGTGGATCTCCGTGAGCGCCTGTATCGCAAAAAGATCGGCGACCGTGTGA
ACATCACGTTCTACCGTTCGGGAAAGAAAAAAACAGCGGAAGTCAAACTGACAGAAGCGGATCGATTACAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

43.434

99.497

0.432

  htrA Streptococcus mitis NCTC 12261

41.451

96.985

0.402

  htrA Streptococcus gordonii str. Challis substr. CH1

40.665

98.241

0.399