Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   IC769_RS13980 Genome accession   NZ_CP061672
Coordinates   2978354..2979391 (+) Length   345 a.a.
NCBI ID   WP_019456823.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2973354..2984391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS13970 (IC769_13970) - 2976586..2977428 (-) 843 WP_174744079.1 undecaprenyl-diphosphate phosphatase -
  IC769_RS13975 (IC769_13975) - 2977535..2978227 (-) 693 WP_191108628.1 YggS family pyridoxal phosphate-dependent enzyme -
  IC769_RS13980 (IC769_13980) pilT 2978354..2979391 (+) 1038 WP_019456823.1 type IV pilus twitching motility protein PilT Machinery gene
  IC769_RS13985 (IC769_13985) pilU 2979419..2980537 (+) 1119 WP_004703285.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  IC769_RS13990 (IC769_13990) fur 2980607..2981044 (-) 438 WP_004703287.1 ferric iron uptake transcriptional regulator -
  IC769_RS13995 (IC769_13995) - 2981156..2981554 (+) 399 WP_004703289.1 outer membrane protein assembly factor BamE -
  IC769_RS14000 (IC769_14000) - 2981610..2981933 (-) 324 WP_191108629.1 RnfH family protein -
  IC769_RS14005 (IC769_14005) - 2981933..2983000 (-) 1068 WP_191108630.1 hypothetical protein -
  IC769_RS14010 (IC769_14010) - 2983153..2983608 (-) 456 WP_004703295.1 bacteriohemerythrin -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38372.98 Da        Isoelectric Point: 6.6653

>NTDB_id=484011 IC769_RS13980 WP_019456823.1 2978354..2979391(+) (pilT) [Acinetobacter seifertii strain AS23]
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALEHKDVHRLVYDIMNDKQRRDYEEKLETDFSFEVPNVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGQIFKDICDYPRGIVLVTGPTGSGKSTTLAAMMDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANYGMTTLDQSL
KGLVSRGVISPQTARTAAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=484011 IC769_RS13980 WP_019456823.1 2978354..2979391(+) (pilT) [Acinetobacter seifertii strain AS23]
ATGGATATTACAGAACTACTCGCCTTCTCTGTGAAAAATGGCGCTTCCGATTTACATTTATCTGCTGGCATGCCACCAAT
GATTCGTGTCGATGGTGAAGTTCGTCGTATTAACTTACCAGCCTTAGAACATAAAGATGTGCATCGCCTTGTGTATGACA
TCATGAACGATAAACAGCGCCGTGATTATGAAGAAAAACTCGAAACTGACTTTTCTTTTGAAGTACCAAATGTTGCACGT
TTCCGTGTGAACGCATTTAACCAAAACCGTGGTGCTGGCGCAGTATTTCGTACCATTCCATCTAAAGTACTCACCATGGA
AGATTTAGGCTTAGGTCAAATCTTTAAAGATATTTGCGACTATCCTCGCGGGATTGTACTGGTGACAGGGCCAACAGGTT
CGGGTAAATCAACCACGCTTGCAGCGATGATGGACTACATTAATGAAAATCGTTATGACCATATTTTAACGGTTGAAGAC
CCAATCGAATTTGTACACCAGTCAAAAAAATGCCTCATTAACCAACGTGAAGTACATCGTGATACACATGGCTTTAATGA
AGCACTTCGCTCAGCACTGCGTGAAGACCCTGATATTATTTTGGTCGGTGAGATGCGTGACCTTGAAACAATTCGTTTGG
CCCTTACAGCTGCCGAAACAGGTCACTTAGTATTTGGTACGCTTCATACCACATCTGCCGCTAAAACCATTGACCGTGTG
ATTGACGTATTCCCTGCCGAAGAAAAAGACATGGTTCGTGCCATGCTGTCAGAATCTTTACAAGCCGTTATTTCGCAAAC
TCTGCTTAAAAAGAACGGGGGTGGCCGTGTTGCAGCACATGAAATTATGATTGGTATTCCTGCCATTCGTAACTTAATTC
GTGAAAACAAAGTCGCACAAATGTATTCAGCTATTCAAACTGGTGCTAACTATGGCATGACAACGCTTGATCAAAGCTTA
AAAGGTTTAGTGTCACGTGGTGTAATTAGCCCACAAACTGCACGTACTGCGGCAAAACAGCCTGAATCATTCCTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

99.42

100

0.994
  pilT Acinetobacter baumannii D1279779

99.13

100

0.991
  pilT Acinetobacter baumannii strain A118

99.13

100

0.991
  pilT Acinetobacter baylyi ADP1

88.081

99.71

0.878
  pilT Pseudomonas aeruginosa PAK

83.721

99.71

0.835
  pilT Pseudomonas stutzeri DSM 10701

83.43

99.71

0.832
  pilT Legionella pneumophila strain Lp02

75.581

99.71

0.754
  pilT Legionella pneumophila strain ERS1305867

75.581

99.71

0.754
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.131

97.391

0.693
  pilT Vibrio cholerae strain A1552

71.131

97.391

0.693
  pilT Neisseria meningitidis 8013

68.116

100

0.681
  pilT Neisseria gonorrhoeae MS11

67.826

100

0.678
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.174

100

0.522
  pilU Vibrio cholerae strain A1552

41.593

98.261

0.409
  pilU Pseudomonas stutzeri DSM 10701

40.597

97.101

0.394
  pilU Acinetobacter baylyi ADP1

38.728

100

0.388